View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_low_12 (Length: 239)
Name: NF8709_low_12
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4169652 - 4169426
Alignment:
| Q |
1 |
tctgaaacaagaaacatagaaaccaatctattgatgcacaaatttctatctagattcca----gtcttatacaaatacaacactatataattttgtttct |
96 |
Q |
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| T |
4169652 |
tctgaaacaagaaacatagaaaccaatctattgatgcacaaatatctatctagattccatccagtcttatacaaatacaacactatataattttgtttct |
4169553 |
T |
|
| Q |
97 |
ttctatatttgtttataattaattagaacaatccaaacaatctaatgtaatgaaaaacaaatcacaaaataacacttgaagcttgtctaatcctctcctc |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4169552 |
ttctatatttgtttataattaattagatcaatccaaacaatctaatataatgaaaaacaaatcacaaaataacacttgaagcttgtctaatcctcttctc |
4169453 |
T |
|
| Q |
197 |
ttatgctgaaactatgcatccattatc |
223 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
4169452 |
ttatgctgaaactatgcatccgttatc |
4169426 |
T |
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