View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8709_low_2 (Length: 532)

Name: NF8709_low_2
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8709_low_2
NF8709_low_2
[»] chr5 (27 HSPs)
chr5 (12-335)||(26619984-26620307)
chr5 (334-520)||(12278860-12279047)
chr5 (325-520)||(31680339-31680534)
chr5 (334-520)||(17332551-17332738)
chr5 (341-520)||(37254628-37254808)
chr5 (334-508)||(31501728-31501903)
chr5 (368-520)||(33430335-33430488)
chr5 (354-517)||(10033927-10034091)
chr5 (354-520)||(13817977-13818144)
chr5 (355-520)||(26283318-26283484)
chr5 (354-517)||(39657509-39657673)
chr5 (356-519)||(1776377-1776541)
chr5 (333-520)||(36291350-36291538)
chr5 (354-520)||(36293621-36293788)
chr5 (354-520)||(39434696-39434863)
chr5 (372-520)||(16155015-16155164)
chr5 (356-520)||(19985941-19986106)
chr5 (384-509)||(16333887-16334013)
chr5 (354-504)||(3155647-3155798)
chr5 (373-520)||(43068896-43069044)
chr5 (367-479)||(28801300-28801415)
chr5 (334-384)||(26543902-26543952)
chr5 (336-403)||(202621-202688)
chr5 (66-97)||(11925995-11926026)
chr5 (486-520)||(28801439-28801473)
chr5 (334-366)||(4307238-4307270)
chr5 (334-366)||(15917017-15917049)
[»] chr7 (22 HSPs)
chr7 (343-520)||(34389056-34389234)
chr7 (335-520)||(37002144-37002330)
chr7 (333-520)||(26624724-26624913)
chr7 (334-520)||(43184468-43184655)
chr7 (342-518)||(8867733-8867910)
chr7 (355-518)||(14777109-14777273)
chr7 (363-520)||(35090177-35090335)
chr7 (354-517)||(5555487-5555651)
chr7 (334-520)||(33685544-33685731)
chr7 (357-517)||(3114099-3114260)
chr7 (334-520)||(7002705-7002892)
chr7 (334-520)||(7048576-7048763)
chr7 (354-520)||(36630816-36630983)
chr7 (354-520)||(8394125-8394292)
chr7 (372-520)||(36658199-36658348)
chr7 (373-520)||(40920003-40920151)
chr7 (377-519)||(38638237-38638380)
chr7 (48-133)||(2654219-2654304)
chr7 (420-479)||(10868514-10868575)
chr7 (342-399)||(10876829-10876886)
chr7 (341-390)||(37966614-37966663)
chr7 (263-335)||(2654433-2654505)
[»] chr3 (24 HSPs)
chr3 (341-520)||(45182968-45183148)
chr3 (333-520)||(6930894-6931082)
chr3 (335-520)||(33040934-33041120)
chr3 (341-520)||(11018212-11018392)
chr3 (337-520)||(27935161-27935345)
chr3 (335-504)||(45335856-45336025)
chr3 (355-520)||(22968444-22968610)
chr3 (333-504)||(19565517-19565689)
chr3 (354-520)||(19390146-19390313)
chr3 (355-519)||(6269427-6269592)
chr3 (341-520)||(6503569-6503749)
chr3 (354-520)||(34084122-34084289)
chr3 (355-520)||(39771791-39771957)
chr3 (367-520)||(40081741-40081893)
chr3 (342-520)||(35514254-35514429)
chr3 (376-479)||(5135291-5135397)
chr3 (333-391)||(6890977-6891035)
chr3 (342-403)||(5354697-5354758)
chr3 (63-129)||(19585303-19585369)
chr3 (354-402)||(22922157-22922205)
chr3 (472-520)||(22922214-22922262)
chr3 (63-129)||(12298022-12298088)
chr3 (486-520)||(5135421-5135455)
chr3 (486-514)||(51262115-51262143)
[»] chr6 (14 HSPs)
chr6 (334-520)||(28996710-28996897)
chr6 (354-520)||(18339106-18339273)
chr6 (355-520)||(398618-398784)
chr6 (333-504)||(29743262-29743434)
chr6 (354-517)||(13837821-13837985)
chr6 (354-517)||(34948761-34948925)
chr6 (370-520)||(33229336-33229487)
chr6 (341-449)||(31028435-31028544)
chr6 (341-438)||(24697899-24697997)
chr6 (334-390)||(13646997-13647053)
chr6 (334-390)||(34385519-34385575)
chr6 (342-391)||(21149331-21149380)
chr6 (341-391)||(2753337-2753387)
chr6 (486-514)||(11971095-11971123)
[»] chr2 (25 HSPs)
chr2 (334-520)||(45418563-45418750)
chr2 (335-520)||(44084603-44084789)
chr2 (334-519)||(8147331-8147518)
chr2 (335-519)||(770975-771165)
chr2 (357-520)||(41251634-41251798)
chr2 (354-509)||(42439986-42440142)
chr2 (355-520)||(6403804-6403970)
chr2 (354-517)||(32127144-32127308)
chr2 (354-517)||(35962715-35962879)
chr2 (372-520)||(12756837-12756986)
chr2 (354-520)||(17445041-17445206)
chr2 (354-520)||(31581622-31581789)
chr2 (341-517)||(8059336-8059513)
chr2 (357-517)||(16405603-16405764)
chr2 (360-517)||(18981622-18981780)
chr2 (354-490)||(2958131-2958267)
chr2 (379-509)||(2285887-2286018)
chr2 (334-467)||(26237937-26238071)
chr2 (334-479)||(4555250-4555397)
chr2 (420-520)||(26162702-26162799)
chr2 (333-384)||(34523219-34523270)
chr2 (363-479)||(7072589-7072710)
chr2 (54-120)||(27034840-27034906)
chr2 (374-432)||(34905969-34906028)
chr2 (486-514)||(31392932-31392960)
[»] chr4 (45 HSPs)
chr4 (331-520)||(3292896-3293086)
chr4 (335-520)||(30216742-30216928)
chr4 (334-520)||(6690235-6690422)
chr4 (334-518)||(50205079-50205264)
chr4 (341-520)||(43143584-43143764)
chr4 (341-520)||(42333776-42333956)
chr4 (342-520)||(48989316-48989495)
chr4 (355-520)||(20129311-20129477)
chr4 (354-520)||(25930708-25930875)
chr4 (355-520)||(13012189-13012355)
chr4 (355-520)||(47500774-47500940)
chr4 (334-502)||(10352902-10353071)
chr4 (334-520)||(28877250-28877437)
chr4 (354-520)||(36382346-36382512)
chr4 (355-520)||(26439279-26439445)
chr4 (355-520)||(34407284-34407450)
chr4 (371-520)||(44156668-44156818)
chr4 (334-504)||(30077647-30077817)
chr4 (355-520)||(43355905-43356071)
chr4 (357-517)||(29319708-29319869)
chr4 (336-507)||(26448035-26448206)
chr4 (341-520)||(29995983-29996163)
chr4 (378-520)||(35545977-35546120)
chr4 (367-517)||(40529028-40529179)
chr4 (364-520)||(17511233-17511391)
chr4 (420-520)||(6235587-6235687)
chr4 (343-479)||(30109945-30110084)
chr4 (334-508)||(13392893-13393057)
chr4 (334-508)||(13396032-13396196)
chr4 (366-479)||(48129978-48130087)
chr4 (389-520)||(1817752-1817884)
chr4 (333-391)||(49908782-49908840)
chr4 (334-391)||(5517494-5517551)
chr4 (341-395)||(7769315-7769369)
chr4 (334-390)||(6212029-6212085)
chr4 (342-453)||(45194164-45194276)
chr4 (336-390)||(17554978-17555032)
chr4 (333-438)||(27363340-27363446)
chr4 (54-120)||(35088800-35088866)
chr4 (341-391)||(50720476-50720526)
chr4 (334-390)||(12680193-12680249)
chr4 (379-446)||(6254569-6254637)
chr4 (486-520)||(30110108-30110142)
chr4 (486-520)||(48130111-48130145)
chr4 (486-514)||(4325547-4325575)
[»] chr8 (16 HSPs)
chr8 (334-520)||(23402088-23402275)
chr8 (341-520)||(16788025-16788205)
chr8 (332-520)||(34136825-34137014)
chr8 (341-520)||(4403995-4404175)
chr8 (354-520)||(29728386-29728553)
chr8 (334-520)||(36408531-36408718)
chr8 (355-520)||(39914516-39914681)
chr8 (354-517)||(15838286-15838449)
chr8 (368-520)||(3648794-3648947)
chr8 (376-520)||(9877242-9877387)
chr8 (335-508)||(2729208-2729382)
chr8 (370-479)||(3435285-3435397)
chr8 (428-520)||(42231012-42231104)
chr8 (338-403)||(10397158-10397223)
chr8 (486-520)||(40470475-40470509)
chr8 (377-446)||(40470567-40470637)
[»] scaffold0502 (1 HSPs)
scaffold0502 (354-520)||(5230-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (334-520)||(31460-31647)
[»] chr1 (19 HSPs)
chr1 (341-520)||(35907539-35907719)
chr1 (334-519)||(17445293-17445479)
chr1 (355-520)||(26144256-26144422)
chr1 (354-520)||(32982056-32982223)
chr1 (341-520)||(3828971-3829150)
chr1 (358-517)||(7433449-7433609)
chr1 (354-520)||(42310941-42311108)
chr1 (341-520)||(321377-321557)
chr1 (333-479)||(41972314-41972462)
chr1 (333-479)||(33489666-33489815)
chr1 (335-391)||(31866958-31867014)
chr1 (362-459)||(23313246-23313345)
chr1 (334-390)||(44352614-44352670)
chr1 (63-129)||(52779302-52779368)
chr1 (334-403)||(48901223-48901291)
chr1 (486-520)||(33489839-33489873)
chr1 (486-520)||(41972256-41972290)
chr1 (486-514)||(25017522-25017550)
chr1 (486-514)||(32379867-32379895)
[»] scaffold0002 (1 HSPs)
scaffold0002 (355-520)||(480457-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (355-520)||(523-689)
[»] scaffold0041 (1 HSPs)
scaffold0041 (373-520)||(52944-53092)
[»] scaffold0069 (1 HSPs)
scaffold0069 (354-520)||(17842-18009)
[»] scaffold0769 (1 HSPs)
scaffold0769 (336-384)||(1259-1307)
[»] scaffold0012 (1 HSPs)
scaffold0012 (347-384)||(194021-194058)
[»] scaffold0329 (1 HSPs)
scaffold0329 (63-129)||(12631-12697)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 26619984 - 26620307
Alignment:
Q  12 tcagaaagaagatctaagcaatattttttctaacaaatggagatgccagctttggaatgagctacttcaataccaagaaaatatttgagttgacctaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26619984 tcagaaagaagatctaagcaatattttttctaacaaatggagatgccagctttggaatgagctacttcaataccaagaaaatatttgagttgacctaaat 26620083  T
Q  112 ccttgatttgaaatgaagtgtggagaacactttttatgaaagaaaactcggagagggagtttccagccagaatcaaatcatcaacataaaccagtaaaag 211  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26620084 ccttgatttgaaatgaagcgtggagaactctttttatgaaagaaaacttggagagggagtttccagccagaatcacatcatcaacataaaccagtaaaag 26620183  T
Q  212 agtgaataatcaaagggtggttttcgtgaataaagaatgatctgatgcagcttgtgtgtattcatgttgaacaagcaaagaagttaatctttcatatcat 311  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620184 agtgaataatcaaagggtggttttcgcgaataaagaatgatttgatgcagcttgtgtgtattcatgttgaacaagcaaagaagttaatctttcatatcat 26620283  T
Q  312 tttctactggcttgtttaaggcca 335  Q
    |||||||| |||||||||||||||    
T  26620284 tttctacttgcttgtttaaggcca 26620307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 12279047 - 12278860
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaag-ctaattaacagactta 432  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| | |||||||| |||||    
T  12279047 caggggcggtttcaccgcccggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacactta 12278948  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12278947 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 325 - 520
Target Start/End: Original strand, 31680339 - 31680534
Alignment:
Q  325 gtttaaggccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaatta 423  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||| |||||    
T  31680339 gtttaaggc-aggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaatta 31680437  T
Q  424 acagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31680438 acacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 17332738 - 17332551
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||||| |||||    
T  17332738 caggggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacactta 17332639  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  17332638 caaaaagaaaaatttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 37254628 - 37254808
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||  |||||||| ||||||||||||    
T  37254628 ggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaag 37254727  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  37254728 aaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 508
Target Start/End: Complemental strand, 31501903 - 31501728
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||    
T  31501903 caggggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacactta 31501804  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 508  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  31501803 caaaaagaaaaatttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 368 - 520
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  368 gtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctc 466  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
Q  467 acacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 10033927 - 10034091
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  10033927 ggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 10034026  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10034027 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 13817977 - 13818144
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  13817977 ggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 13818076  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  13818077 atctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctc 13818144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 26283484 - 26283318
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| | | ||||||| | ||| ||||||||||||||||||||    
T  26283484 gcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaa 26283385  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26283384 tctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 354 - 517
Target Start/End: Complemental strand, 39657673 - 39657509
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||| | ||||||  |||||||||| |||||||||||||||||||||  |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  39657673 ggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggca 39657574  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39657573 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 1776541 - 1776377
Alignment:
Q  356 cgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaat 454  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |   ||||||||  |  ||||||| | |||||||||||||||||||||||||    
T  1776541 cgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaat 1776442  T
Q  455 ctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1776441 ttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 333 - 520
Target Start/End: Original strand, 36291350 - 36291538
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactt 431  Q
    ||||||| |||||||||||||| |||| ||||||||||| ||||| |||||| ||||||||||||||||||| |||||| ||||| | ||||||| | ||    
T  36291350 ccaggggcggtttcaccgcccgccgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacattt 36291449  T
Q  432 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||| |||||| | |||| |||||||||||  |||||||||||| |||||||||||| ||||||||||    
T  36291450 acaaaaagaaaaatttgggcaatctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 36293788 - 36293621
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||||| ||||||| |||| |||||||||||||||||| |||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  36293788 ggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 36293689  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  36293688 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctc 36293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 39434696 - 39434863
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||  ||||||| | |||||||| ||||||||||||||    
T  39434696 ggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggca 39434795  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  39434796 atctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctc 39434863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 372 - 520
Target Start/End: Original strand, 16155015 - 16155164
Alignment:
Q  372 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 470  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||| ||||||||||||||| ||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  471 gcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 356 - 520
Target Start/End: Original strand, 19985941 - 19986106
Alignment:
Q  356 cgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaat 454  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||   |||| |||||   |||| || | ||||||||||||||||||||| |||    
T  19985941 cgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttgggtaat 19986040  T
Q  455 ctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    || |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19986041 ctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 384 - 509
Target Start/End: Complemental strand, 16334013 - 16333887
Alignment:
Q  384 cgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtct 482  Q
    |||||||||||||||||||||   |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  483 tggaattttatttagcacactattgac 509  Q
    |||||||||||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgac 16333887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 3155798 - 3155647
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||||| |||  |||| |||||   ||||||| | ||| |||||||||||||||| ||    
T  3155798 ggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttggaca 3155699  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 504  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  3155698 atctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 373 - 520
Target Start/End: Original strand, 43068896 - 43069044
Alignment:
Q  373 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 471  Q
    |||||||||||| ||||||||| ||||||||||| |||| |||||   ||||||| | |||||||||||||||||||||||||||||||||||| ||| |    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  472 caaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
     ||||| |||| |||||||||||||||||||||||| | | ||||||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 28801300 - 28801415
Alignment:
Q  367 ggtcgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaaaaatttggg--caatctgaaaatt 463  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||||  ||||||| |||||||||||||||||||||||   ||| ||||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaatt 28801399  T
Q  464 ctcacacgcaaatagg 479  Q
    ||||||||||||||||    
T  28801400 ctcacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 26543952 - 26543902
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 384  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  26543952 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 26543902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 202621 - 202688
Alignment:
Q  336 ggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattag 403  Q
    |||| |||||||||||||| ||||||  || |||||||||||||||||||||||||| || |||||||    
T  202621 ggggcggtttcaccgcccgacgaccctaggtggtcgcccgggctcgatcgataatttgtgtacattag 202688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 11926026 - 11925995
Alignment:
Q  66 gaatgagctacttcaataccaagaaaatattt 97  Q
    ||||||||||||||||||||||||||||||||    
T  11926026 gaatgagctacttcaataccaagaaaatattt 11925995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Original strand, 28801439 - 28801473
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||| |||||||||||||||||||||    
T  28801439 aattttatttagctcactattgacaggttcatctc 28801473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 4307270 - 4307238
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggc 366  Q
    |||||| ||||||||||||||||||||||||||    
T  4307270 caggggcggtttcaccgcccggcgaccccgggc 4307238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 15917017 - 15917049
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggc 366  Q
    |||||| ||||||||||||||||||||||||||    
T  15917017 caggggcggtttcaccgcccggcgaccccgggc 15917049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 343 - 520
Target Start/End: Complemental strand, 34389234 - 34389056
Alignment:
Q  343 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  34389234 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaa 34389135  T
Q  442 aaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||    
T  34389134 aaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 335 - 520
Target Start/End: Complemental strand, 37002330 - 37002144
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttac 433  Q
    ||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| || |||||||  |||||||| ||||||    
T  37002330 aggggcggtttcaccgcccggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttac 37002231  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37002230 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 333 - 520
Target Start/End: Original strand, 26624724 - 26624913
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgat-cgataatttttgcacattagacctaa-ccaaaagctaattaacagact 430  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||| || ||||||| ||||||||| |||    
T  26624724 ccaggggcggtttcaccgcccggcaaccccgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacact 26624823  T
Q  431 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  26624824 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 43184655 - 43184468
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||| | ||| |||| ||||| |||||| |||||||| |||||    
T  43184655 caggggcggtttcaccgcccggcgattccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatactta 43184556  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  43184555 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 342 - 518
Target Start/End: Complemental strand, 8867910 - 8867733
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaaga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||| | | |||||||||||    
T  8867910 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaaga 8867811  T
Q  441 aaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatc 518  Q
    ||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  8867810 aaaatttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 355 - 518
Target Start/End: Complemental strand, 14777273 - 14777109
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  14777273 gcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaa 14777174  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatc 518  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  14777173 tctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatc 14777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 363 - 520
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
Q  363 gggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaa 461  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  462 ttctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 5555487 - 5555651
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||  | |||||||||||||||||||||||    
T  5555487 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggca 5555586  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  5555587 atctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 33685544 - 33685731
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||  ||||||| |||||    
T  33685544 caggggcggtttcaccgcccggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacactta 33685643  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||   |||||||||||||||||||||||| |||| |||||    
T  33685644 caaaaagaaaaatttgggcaatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 357 - 517
Target Start/End: Complemental strand, 3114260 - 3114099
Alignment:
Q  357 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatc 455  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||||    
T  3114260 gaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatc 3114161  T
Q  456 tgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  3114160 tgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 7002705 - 7002892
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||  |||||| ||| |||| |||||| |||||||| || ||    
T  7002705 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacata 7002804  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  7002805 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 7048576 - 7048763
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||  |||||| ||| |||| |||||| |||||||| || ||    
T  7048576 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacata 7048675  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  7048676 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 36630816 - 36630983
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||||||||||||||||||    
T  36630816 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggca 36630915  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  36630916 atctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 8394125 - 8394292
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||||||    
T  8394125 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggca 8394224  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  8394225 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 372 - 520
Target Start/End: Original strand, 36658199 - 36658348
Alignment:
Q  372 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 470  Q
    ||||| |||||||||||||||||||||||| |||| |||| |||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  36658199 cccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacac 36658298  T
Q  471 gcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36658299 gcaaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 373 - 520
Target Start/End: Complemental strand, 40920151 - 40920003
Alignment:
Q  373 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 471  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| |    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
Q  472 caaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  40920051 caaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 377 - 519
Target Start/End: Complemental strand, 38638380 - 38638237
Alignment:
Q  377 gctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaa 475  Q
    ||||||| |||||||||||||||||||| | |||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38638380 gctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaa 38638281  T
Q  476 taggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  38638280 taggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 2654219 - 2654304
Alignment:
Q  48 atggagatgccagctttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgatttgaaatgaagtgtg 133  Q
    |||||||||||| ||||||| || ||||| |  | |||||||||||| |||||| | |||||||||||||||||||| ||||||||    
T  2654219 atggagatgccaactttggagtgtgctacctatagaccaagaaaataattgagtaggcctaaatccttgatttgaaaagaagtgtg 2654304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 10868575 - 10868514
Alignment:
Q  420 attaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgcaaatagg 479  Q
    ||||||| | ||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  10868575 attaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 10876886 - 10876829
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcaca 399  Q
    |||||||  |||||||| |||| | |||||||||||||||||||||||||||||||||    
T  10876886 gtttcacttcccggcgaacccgtgtggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 37966663 - 37966614
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||||||||||||||||| | |||||||| ||| ||||||||||||||    
T  37966663 ggtttcaccgcccggcgacctcaggcggtcgtccgagctcgatcgataat 37966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 2654433 - 2654505
Alignment:
Q  263 ttgtgtgtattcatgttgaacaagcaaagaagttaatctttcatatcattttctactggcttgtttaaggcca 335  Q
    ||||| |||| |||| |||| ||| |||||||||||||||||||  ||||||||||   ||||||| ||||||    
T  2654433 ttgtgcgtatccatgatgaataagtaaagaagttaatctttcatgccattttctaccaacttgtttgaggcca 2654505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 45182968 - 45183148
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| ||||||||||||    
T  45182968 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaag 45183067  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  45183068 aaaaatttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 333 - 520
Target Start/End: Complemental strand, 6931082 - 6930894
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactt 431  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||| | ||    
T  6931082 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacattt 6930983  T
Q  432 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  6930982 acaaaaagaaaaatttaggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 335 - 520
Target Start/End: Original strand, 33040934 - 33041120
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttac 433  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||| ||||||||||||||| ||||||    
T  33040934 aggggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttac 33041033  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  33041034 aaaaagaaaaatttgaacaatttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 11018392 - 11018212
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||    
T  11018392 ggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaag 11018293  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||| ||||||||||    
T  11018292 aaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 337 - 520
Target Start/End: Original strand, 27935161 - 27935345
Alignment:
Q  337 gggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaa 435  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||||||    
T  27935161 gggtggtttcaccgcctggcaaccctgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaa 27935260  T
Q  436 aaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  27935261 aaagaaaaatttgggcaatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 45335856 - 45336025
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttaca 434  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||  | ||||||| | |||||    
T  45335856 aggggcggtttcaccgcccggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtcattaacacatttaca 45335955  T
Q  435 aaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 504  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45335956 aaaagaaaaatctgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 22968610 - 22968444
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||| | ||||||||||||||||||||||||    
T  22968610 gcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 22968511  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22968510 tctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 22968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 333 - 504
Target Start/End: Complemental strand, 19565689 - 19565517
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagactt 431  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||  |  ||||||| | ||    
T  19565689 ccaggggcggtttcaccgcccggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacattt 19565590  T
Q  432 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 504  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19565589 acaaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 19390146 - 19390313
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||  |||| |||||   ||||||| | |||||||||||||||||||||||    
T  19390146 ggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggca 19390245  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19390246 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 19390313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 355 - 519
Target Start/End: Complemental strand, 6269592 - 6269427
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||    
T  6269592 gcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 6269493  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  6269492 tctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 6503749 - 6503569
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||| |||||| ||||| || ||||||||||||    
T  6503749 ggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaag 6503650  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||  |||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||  ||||||||||    
T  6503649 aaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctc 6503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 34084289 - 34084122
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |   ||||||||  |  ||||||| | |||||||||||||||||||||||    
T  34084289 ggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggca 34084190  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34084189 atatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 39771791 - 39771957
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| ||||||||||||||||||||    
T  39771791 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 39771890  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  39771891 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 39771957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 367 - 520
Target Start/End: Complemental strand, 40081893 - 40081741
Alignment:
Q  367 ggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctc 466  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| ||    
T  40081893 ggtcgcccgggctcgatcgataatttttgaacattagactcaaccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtc 40081794  T
Q  467 acacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||    
T  40081793 acacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 342 - 520
Target Start/End: Original strand, 35514254 - 35514429
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaaga 440  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| | |||| | |||| |||||   ||||||| ||    |||||||    
T  35514254 gtttcaccgcccggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacacac----aaaaaga 35514349  T
Q  441 aaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  35514350 aaaatttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  376 ggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgc 472  Q
    |||||||||||| ||||||| |||||||||| |||| ||||||| ||||||| |||||||||||||||||||||| |  |||| |||||||||||||| |    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacac 5135390  T
Q  473 aaatagg 479  Q
    |||||||    
T  5135391 aaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 6890977 - 6891035
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6890977 ccaggggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 5354697 - 5354758
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattag 403  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||    
T  5354697 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatccttaattttctcacattag 5354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 19585303 - 19585369
Alignment:
Q  63 ttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgatttgaaatgaag 129  Q
    ||||| ||||| ||||||||||||||||||||||| || |||||||| || ||||||| ||||||||    
T  19585303 ttggagtgagcaacttcaataccaagaaaatatttaagctgacctaagtctttgattttaaatgaag 19585369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 22922157 - 22922205
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacatta 402  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  22922157 ggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacatta 22922205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Original strand, 22922214 - 22922262
Alignment:
Q  472 caaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 12298088 - 12298022
Alignment:
Q  63 ttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgatttgaaatgaag 129  Q
    ||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||| ||||||||    
T  12298088 ttggagtgagcaacttcaataccaagaaaatatttaagctggcctaagtctttgattttaaatgaag 12298022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Original strand, 5135421 - 5135455
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctc 5135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 51262115 - 51262143
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  51262115 aattttatttagcacactattgacaggtt 51262143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 28996710 - 28996897
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||  |||||||| |||||    
T  28996710 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacactta 28996809  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28996810 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 18339106 - 18339273
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||| |||||||| |||||||||||||||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 398618 - 398784
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  398618 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 398717  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  398718 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 333 - 504
Target Start/End: Original strand, 29743262 - 29743434
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagactt 431  Q
    ||||||| |||||||||| ||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| | | ||||||| | ||    
T  29743262 ccaggggcggtttcaccgtccgacgatcccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacattt 29743361  T
Q  432 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 504  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  29743362 acagaaagaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 13837821 - 13837985
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||||||||| |||| |||| ||||||||||||||||| |||||||||  |||| ||||||  || |||| | |||||||||||||||||||||||    
T  13837821 ggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggca 13837920  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13837921 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 354 - 517
Target Start/End: Complemental strand, 34948925 - 34948761
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  34948925 ggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 34948826  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  34948825 atctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 370 - 520
Target Start/End: Complemental strand, 33229487 - 33229336
Alignment:
Q  370 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 468  Q
    |||||||||||||||||| ||||||| |||||||||| |||| |||||   ||||||| | || ||||||||||||||||||||||||||||||||| ||    
T  33229487 cgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  469 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||| ||||| |||| || ||||||||||||||||||||| | | ||||||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 341 - 449
Target Start/End: Complemental strand, 31028544 - 31028435
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||| | ||||||||||    
T  31028544 ggtttcaccgcccggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaag 31028445  T
Q  440 aaaaatttgg 449  Q
     ||| |||||    
T  31028444 gaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 24697997 - 24697899
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaa 438  Q
    |||||||||||||||||||||||| |  |||||||||||| ||||||||||||| |||||||| || || ||||||||  ||||||| |||||||||||    
T  24697997 ggtttcaccgcccggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 13646997 - 13647053
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13646997 caggggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 34385575 - 34385519
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  34385575 caggggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatcgataat 34385519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 21149380 - 21149331
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    |||||||||||||| |||| ||||||||||| |||||| |||||||||||    
T  21149380 gtttcaccgcccggtgacctcgggcggtcgctcgggcttgatcgataatt 21149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 2753337 - 2753387
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    |||||||||| ||||||||||  |||||||||||| |||| ||||||||||    
T  2753337 ggtttcaccgtccggcgaccctaggcggtcgcccgagctcaatcgataatt 2753387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 11971095 - 11971123
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  11971095 aattttatttagcacactattgacaggtt 11971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 45418563 - 45418750
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||| |||||    
T  45418563 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacactta 45418662  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  45418663 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 335 - 520
Target Start/End: Complemental strand, 44084789 - 44084603
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttac 433  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||| | ||||||| ||||||    
T  44084789 aggggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttac 44084690  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  44084689 aaaaagaaaaatttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 519
Target Start/End: Original strand, 8147331 - 8147518
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaac-caaaagctaattaacagactta 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||  |||||||| |||||    
T  8147331 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacactta 8147430  T
Q  433 caaaaagaaaaatttgggcaatctg-aaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||    
T  8147431 caaaaagaaaaatttgggcaatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 335 - 519
Target Start/End: Original strand, 770975 - 771165
Alignment:
Q  335 aggggtggtttcaccgcccggcgacc-----ccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacaga 428  Q
    ||||| ||||||||||||||||||||     ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||  ||||||| |    
T  770975 aggggcggtttcaccgcccggcgaccggatcccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacaca 771074  T
Q  429 cttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||    
T  771075 cttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 357 - 520
Target Start/End: Complemental strand, 41251798 - 41251634
Alignment:
Q  357 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatc 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||||    
T  41251798 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatc 41251699  T
Q  456 tgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41251698 tgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 41251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 354 - 509
Target Start/End: Original strand, 42439986 - 42440142
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  42439986 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 42440085  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgac 509  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42440086 atctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgac 42440142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 6403970 - 6403804
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | | ||||||| | ||| ||||||||||||||||||||    
T  6403970 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaa 6403871  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  6403870 tctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 6403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 354 - 517
Target Start/End: Complemental strand, 32127308 - 32127144
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || | | ||||||||| ||||||| | |||||||||||||||||| ||||    
T  32127308 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggca 32127209  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  32127208 atctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 35962715 - 35962879
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | |||||||||||||| ||||||||    
T  35962715 ggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggca 35962814  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  35962815 atctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 372 - 520
Target Start/End: Complemental strand, 12756986 - 12756837
Alignment:
Q  372 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 470  Q
    |||||| |||||||||||||||||| ||||||||| |||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 12756887  T
Q  471 gcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  12756886 gcaaataagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 17445206 - 17445041
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||  |||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  17445206 ggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 17445109  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17445108 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 17445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 31581789 - 31581622
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| |||||||  | || ||||||  ||||||| | |||||||||||||||||||||||    
T  31581789 ggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggca 31581690  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31581689 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 8059513 - 8059336
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||||||| ||||||||| || |||||| ||||| |||||||||||||||||||||||   |||| |||||| |||||||| ||||||||||||    
T  8059513 ggtttcaccgcccgacgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaag 8059414  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||    
T  8059413 aaaaatttggccaatttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgggttcat 8059336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 357 - 517
Target Start/End: Original strand, 16405603 - 16405764
Alignment:
Q  357 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatc 455  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||  |||| ||||||| ||||||| | ||| |||||||||||||||| |||||    
T  16405603 gaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttggacaatc 16405702  T
Q  456 tgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  16405703 tgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 360 - 517
Target Start/End: Original strand, 18981622 - 18981780
Alignment:
Q  360 cccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctga 458  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||  |||| |||||   ||||| | | ||||||||||||||||||||||||| | |    
T  18981622 cccgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggcaatttaa 18981721  T
Q  459 aaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  18981722 aaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcat 18981780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 354 - 490
Target Start/End: Complemental strand, 2958267 - 2958131
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||| ||||||  ||||||| | ||||||| ||||||||||||| |    
T  2958267 ggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttgggta 2958169  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattt 490  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2958168 atctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 379 - 509
Target Start/End: Original strand, 2285887 - 2286018
Alignment:
Q  379 tcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaata 477  Q
    |||||||||||||||||||||||| | | ||||||||  |  ||||||| | |||| ||| |||||||||| |||||||||||||| |||||||||||||    
T  2285887 tcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaaattgtcacacgcaaata 2285986  T
Q  478 ggtcttggaattttatttagcacactattgac 509  Q
    ||| ||||||||||||||||||||||||||||    
T  2285987 ggttttggaattttatttagcacactattgac 2286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 467
Target Start/End: Original strand, 26237937 - 26238071
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagactta 432  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  | |||||||||   ||||||| |||||    
T  26237937 caggggtggttttacagcccggcgaccccgggcggtcgcccgggctcgatcgat-atttttgcaaattagatgcaaaccaaaagtccattaacacactta 26238035  T
Q  433 caaaaagaaaaatttgggc-aatctgaaaattctca 467  Q
    ||||||||||||||||||| |||||||||| |||||    
T  26238036 caaaaagaaaaatttgggcaaatctgaaaactctca 26238071  T

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Target: chr2; HSP #19
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 334 - 479
Target Start/End: Complemental strand, 4555397 - 4555250
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    ||||||||||| ||||||||||||| | |||||||||||  || ||||||||||||||||||||||| | ||| |||| |||||||  |||||| |||||    
T  4555397 caggggtggttccaccgcccggcgatctcgggcggtcgct-ggactcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacactta 4555299  T
Q  433 caaaaagaaaaatttgggc--aatctgaaaattctcacacgcaaatagg 479  Q
    ||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  4555298 caaaaagaaaattttgggcaaaatctgaaaattctcacacgtaaatagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 420 - 520
Target Start/End: Complemental strand, 26162799 - 26162702
Alignment:
Q  420 attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||   |||||||||||| ||||||| |||||||||    
T  26162799 attaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatct 26162703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 34523219 - 34523270
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 384  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  34523219 ccaggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 34523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 479
Target Start/End: Complemental strand, 7072710 - 7072589
Alignment:
Q  363 gggcggtcgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaatta--acagacttacaaaaagaaaaatttgggcaa--tctg 457  Q
    ||||||||||||||||||||||||||||||||  |||||| || | | ||||||||  ||||  ||| ||||| ||||||||||  |||| |||  ||||    
T  7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctg 7072611  T
Q  458 aaaattctcacacgcaaatagg 479  Q
    ||||||||| |||| |||||||    
T  7072610 aaaattctcgcacgtaaatagg 7072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 27034840 - 27034906
Alignment:
Q  54 atgccagctttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgattt 120  Q
    ||||| |||||||||||||| || ||||| ||||| || |||||||||||||| | |||||||||||    
T  27034840 atgcctgctttggaatgagcaacctcaatgccaaggaagtatttgagttgaccaagatccttgattt 27034906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 34905969 - 34906028
Alignment:
Q  374 cgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagactta 432  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||  ||||||| |||||    
T  34905969 cgggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacacactta 34906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 31392932 - 31392960
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  31392932 aattttatttagcacactattgacaggtt 31392960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 331 - 520
Target Start/End: Complemental strand, 3293086 - 3292896
Alignment:
Q  331 ggccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagac 429  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| ||    
T  3293086 ggccaggggcggtttcaccgcccagtgaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacac 3292987  T
Q  430 ttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  3292986 ttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 335 - 520
Target Start/End: Complemental strand, 30216928 - 30216742
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttac 433  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  30216928 aggggcggattcaccgtccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttac 30216829  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  30216828 aaaaagaaaaatttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 6690422 - 6690235
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||    
T  6690422 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacactta 6690323  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  6690322 caaaaagaaaaatttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctc 6690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 334 - 518
Target Start/End: Complemental strand, 50205264 - 50205079
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||| |||||    
T  50205264 caggggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacactta 50205165  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatc 518  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50205164 caaaaagaaaaaattggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 43143764 - 43143584
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||    
T  43143764 ggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaag 43143665  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  43143664 aaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 43143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 42333956 - 42333776
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||| || |||| |||||||||||| |||||||| ||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||    
T  42333956 ggtttcaccgtccagcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaag 42333857  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||    
T  42333856 aaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgataagttcatctc 42333776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 342 - 520
Target Start/End: Original strand, 48989316 - 48989495
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaac-caaaagctaattaacagacttacaaaaaga 440  Q
    ||||||||||||| |||| ||||||||||  ||||| |||||||||||||||||||||||| ||| ||| ||||||   ||||||| |||||||||||||    
T  48989316 gtttcaccgcccgacgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaaga 48989415  T
Q  441 aaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  48989416 aaaatttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 20129311 - 20129477
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||    
T  20129311 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 20129410  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  20129411 tctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctc 20129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 25930708 - 25930875
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||| ||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  25930708 ggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 25930807  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25930808 atttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 13012189 - 13012355
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  13012189 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 13012288  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  13012289 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 13012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 47500774 - 47500940
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | |||  |||||||||||||||||||    
T  47500774 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggcaa 47500873  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  47500874 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 47500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 334 - 502
Target Start/End: Complemental strand, 10353071 - 10352902
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagactta 432  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |  ||||||| | |||    
T  10353071 caggggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacattta 10352972  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacac 502  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  10352971 caaaaggaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 28877437 - 28877250
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||| |||  ||||||| ||||||||  ||||| ||||||||||||||||||||||||   |||| |||||||||||||||  ||||    
T  28877437 caggggcggtttcaccgtccgatgaccccgtgcggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgctta 28877338  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
     ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  28877337 taaaaagaaaaatttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctc 28877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 36382512 - 36382346
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||| ||    
T  36382512 ggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttggaca 36382414  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36382413 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 26439445 - 26439279
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| ||||||||||||||||||||    
T  26439445 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 26439346  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  26439345 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 26439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 34407450 - 34407284
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| ||||||||||||||||||||    
T  34407450 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 34407351  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  34407350 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 34407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 371 - 520
Target Start/End: Original strand, 44156668 - 44156818
Alignment:
Q  371 gcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcaca 469  Q
    |||||||||| | ||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||| ||||| |||||||||||||||| ||    
T  44156668 gcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctca 44156767  T
Q  470 cgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  44156768 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 334 - 504
Target Start/End: Complemental strand, 30077817 - 30077647
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagactta 432  Q
    |||||| |||||||||||||| ||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |||||||| | | ||||||| | |||    
T  30077817 caggggcggtttcaccgcccg-cgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacattta 30077719  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 504  Q
    ||||||||||||||||| ||||||||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  30077718 caaaaagaaaaatttggacaatctgaaaatttttacacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 43355905 - 43356071
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| ||||||||||||||||||||    
T  43355905 gcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 43356004  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  43356005 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 43356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 357 - 517
Target Start/End: Complemental strand, 29319869 - 29319708
Alignment:
Q  357 gaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatc 455  Q
    |||||| |||||||| || ||||||||||||||||||||||||||||||  |||| |||| |  ||||||| | ||||||||||||||||||| ||||||    
T  29319869 gacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaatc 29319770  T
Q  456 tgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  29319769 tgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 336 - 507
Target Start/End: Original strand, 26448035 - 26448206
Alignment:
Q  336 ggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttaca 434  Q
    |||| ||||||||||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||||| | |||||| |||||   ||||||| |||||||    
T  26448035 ggggcggtttcaccgcccggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttaca 26448134  T
Q  435 aaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattg 507  Q
    |||| |||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||    
T  26448135 aaaa-aaaaatttgggcaatctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 29996163 - 29995983
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaag 439  Q
    |||||||||||||| ||| ||||| |||||| |||| |||||||||||||||||| |||||||||  ||||||||  |  ||||||| | |||| |||||    
T  29996163 ggtttcaccgcccgacgatcccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaag 29996064  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| ||||||||||| |||||||||||||| | ||||||||    
T  29996063 aaaaatttgggcaatctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 378 - 520
Target Start/End: Original strand, 35545977 - 35546120
Alignment:
Q  378 ctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 476  Q
    ||||||||| ||||||||| ||| ||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  477 aggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
     |||||  ||||||||||||||||||||||||  ||||||||||    
T  35546077 gggtctctgaattttatttagcacactattgatgggttcatctc 35546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 367 - 517
Target Start/End: Original strand, 40529028 - 40529179
Alignment:
Q  367 ggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattct 465  Q
    ||||| |||| ||||||||||||||||||||||||| ||  |||| |||| || ||||||| | |||||||||||||||||||| |||| |||||||| |    
T  40529028 ggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaatttggacaatttgaaaattgt 40529127  T
Q  466 cacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  40529128 cacatgcaaataggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 520
Target Start/End: Complemental strand, 17511391 - 17511233
Alignment:
Q  364 ggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaat 462  Q
    ||||||||||| | ||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||| |||||||    
T  17511391 ggcggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaat 17511292  T
Q  463 tctcacacgcaaataggtcttgg-aattttatttagcacactattgacaggttcatctc 520  Q
    | | ||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  17511291 tgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctc 17511233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 420 - 520
Target Start/End: Original strand, 6235587 - 6235687
Alignment:
Q  420 attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    ||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6235587 attaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 6235686  T
Q  520 c 520  Q
    |    
T  6235687 c 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 343 - 479
Target Start/End: Original strand, 30109945 - 30110084
Alignment:
Q  343 tttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaa 441  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||| ||||   ||||||| ||||||||||||||    
T  30109945 tttcaccgcccgacgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaa 30110044  T
Q  442 aaatttgggc--aatctgaaaattctcacacgcaaatagg 479  Q
    |||||||| |  ||| |||||| |||||||||||||||||    
T  30110045 aaatttggacaaaatatgaaaaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 334 - 508
Target Start/End: Complemental strand, 13393057 - 13392893
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttac 433  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||| |||||| | ||||||| |||| | | |||| |||    ||          ||    
T  13393057 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatattacatccaacctaaattgtat----------ac 13392968  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 508  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  13392967 aaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 334 - 508
Target Start/End: Complemental strand, 13396196 - 13396032
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttac 433  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||| |||||| | ||||||| |||| | | |||| |||    ||          ||    
T  13396196 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatattacatccaacctaaattgtat----------ac 13396107  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 508  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  13396106 aaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 366 - 479
Target Start/End: Original strand, 48129978 - 48130087
Alignment:
Q  366 cggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattc 464  Q
    |||||| ||||||||||||||||||||||||| |||||||| || ||||||||| ||||||| |||||||||||||||||||||||     |||||| ||    
T  48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg-----tgaaaactc 48130072  T
Q  465 tcacacgcaaatagg 479  Q
    |||||||||||||||    
T  48130073 tcacacgcaaatagg 48130087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 389 - 520
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  389 atttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaa 487  Q
    |||||||||||||||| | || |||||||   ||||| | | ||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  488 ttttatttagcacactattgacaggttcatctc 520  Q
    ||||||||| |||||||||| | | ||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 49908840 - 49908782
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49908840 ccaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 5517551 - 5517494
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5517551 caggggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 7769315 - 7769369
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttg 395  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7769315 ggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 6212085 - 6212029
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  6212085 caggggcggtttcaccgtccggcgacctcgggcggtcgcccgagctcgatcgataat 6212029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 45194164 - 45194276
Alignment:
Q  342 gtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaattaacagacttacaaaaaga 440  Q
    ||||||||||||| ||||||| |||| | |||||| ||||||| ||||||||||||||||| || | | |||||||   ||||||| ||||||||||| |    
T  45194164 gtttcaccgcccgacgaccccaggcgattgcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaa 45194263  T
Q  441 aaaatttgggcaa 453  Q
    |||  ||||||||    
T  45194264 aaatattgggcaa 45194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 17554978 - 17555032
Alignment:
Q  336 ggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  17554978 ggggcggtttcaccgtccgacgaccccgggtggtcgcccgggctcgatcgataat 17555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 27363340 - 27363446
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagactt 431  Q
    ||||||| ||||| ||||   ||||||| |||||||||||||||||||||||||   |||||||| ||||| || || ||||||||  ||||||| ||||    
T  27363340 ccaggggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacactt 27363439  T
Q  432 acaaaaa 438  Q
    |||||||    
T  27363440 acaaaaa 27363446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 35088866 - 35088800
Alignment:
Q  54 atgccagctttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgattt 120  Q
    ||||| |||||||||||||| || ||||||||||| || |||||||||||||| | |||||||||||    
T  35088866 atgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgattt 35088800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 50720526 - 50720476
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  50720526 ggtttcaccgcccggcgacctcgggcggtcgcccgggctcaatcaataatt 50720476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 12680249 - 12680193
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||| ||||||||||||| || ||||| |||||| ||||||||||||||||||||    
T  12680249 caggggcggtttcaccgcccagcaaccccaggcggtggcccgggctcgatcgataat 12680193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 446
Target Start/End: Original strand, 6254569 - 6254637
Alignment:
Q  379 tcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatt 446  Q
    |||||||||||||||||||||||| ||| || |||||||  |||||||| |||| |||||| |||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Original strand, 30110108 - 30110142
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctc 30110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Original strand, 48130111 - 48130145
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctc 48130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 4325547 - 4325575
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  4325547 aattttatttagcacactattgacaggtt 4325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 23402088 - 23402275
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||| |||||||| |||||    
T  23402088 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacactta 23402187  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  23402188 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 16788205 - 16788025
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||    
T  16788205 ggtttcattgcccggcaaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaag 16788106  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16788105 aaaaatttgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 332 - 520
Target Start/End: Complemental strand, 34137014 - 34136825
Alignment:
Q  332 gccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagact 430  Q
    |||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||  |||||||| |||    
T  34137014 gccatgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacact 34136915  T
Q  431 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||  ||||||||||    
T  34136914 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctc 34136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 4403995 - 4404175
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||    
T  4403995 ggtttcactggccggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaag 4404094  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  4404095 aaaaatttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 4404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 29728553 - 29728386
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||  |||| ||||||| ||||||| | |||||||||||||||||||||||    
T  29728553 ggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggca 29728454  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  29728453 atctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 36408531 - 36408718
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagactta 432  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||   ||||||| | |||    
T  36408531 caggggtggtttcaccgcccggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacattta 36408630  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||| |||||| |||||||||| |||||| |||||||||  |||||||||||| |||||||||| | | ||||||||    
T  36408631 caaaaagaaaatttttggcaatttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 39914516 - 39914681
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||| ||||||||||||||    
T  39914516 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggcaa 39914614  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39914615 tttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctc 39914681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 15838286 - 15838449
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||||||    
T  15838286 ggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttgggca 15838384  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15838385 atctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 368 - 520
Target Start/End: Complemental strand, 3648947 - 3648794
Alignment:
Q  368 gtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctc 466  Q
    ||||||||||||||||||||||||||| ||||||||||  |||| ||||||  ||||||| | |||||||||||||| ||||||||||||||||||| ||    
T  3648947 gtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtc 3648848  T
Q  467 acacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  3648847 acacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 376 - 520
Target Start/End: Original strand, 9877242 - 9877387
Alignment:
Q  376 ggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaa 474  Q
    |||||||| ||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  475 ataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||| | |||||||||||||||||||||| ||  ||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattgtcaaattcatctc 9877387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 335 - 508
Target Start/End: Complemental strand, 2729382 - 2729208
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttac 433  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | || | ||||||||  ||||||| |||||     
T  2729382 aggggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttat 2729283  T
Q  434 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 508  Q
    |||||||||  ||| |||||| |||||| ||||| ||||||||||||||   |||||||||||||||||||||||    
T  2729282 aaaaagaaattttttggcaatttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 479
Target Start/End: Original strand, 3435285 - 3435397
Alignment:
Q  370 cgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctc 466  Q
    |||||||||| |||||||||||||||||||||||||| || |||||| |  ||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  3435285 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctc 3435384  T
Q  467 acacgcaaatagg 479  Q
    | |||||||||||    
T  3435385 aaacgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 428 - 520
Target Start/End: Original strand, 42231012 - 42231104
Alignment:
Q  428 acttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||  ||||||||||||||||||||||||| | ||||||||    
T  42231012 acttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 10397223 - 10397158
Alignment:
Q  338 ggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattag 403  Q
    ||||||| |||||||||||||| ||||||  |||||||||||| ||||||||||| | ||||||||    
T  10397223 ggtggttacaccgcccggcgactccgggcactcgcccgggctcaatcgataatttcttcacattag 10397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Complemental strand, 40470509 - 40470475
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctc 40470475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 40470637 - 40470567
Alignment:
Q  377 gctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaaaaatt 446  Q
    |||||||||||||||||||||||||||| || || ||||||   ||||||| ||||| ||||| |||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 5230 - 5397
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||| |||||||| |||||||||||||||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 31460 - 31647
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |||| ||||||  ||||||| |||||    
T  31460 caggggcggtttcatcgcccggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacactta 31559  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  31560 caaaaagaaaaatttggacaatctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 35907539 - 35907719
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||  | ||||||||||||    
T  35907539 ggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaag 35907638  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||    
T  35907639 aaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 334 - 519
Target Start/End: Original strand, 17445293 - 17445479
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactta 432  Q
    |||||| |||||||  |||||||||||||  ||||||||||||||| |||| |||||||||| |||||||| | |||| |||||  |||||||| |||||    
T  17445293 caggggcggtttcattgcccggcgaccccatgcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacactta 17445392  T
Q  433 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  17445393 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 26144256 - 26144422
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  26144256 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 26144355  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26144356 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26144422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 32982223 - 32982056
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||  ||||||| | |||||||||||||||||||| ||    
T  32982223 ggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttggaca 32982124  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  32982123 atctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 3828971 - 3829150
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    ||||||| | |||||| ||||||| ||||||| |||| |||||||||||||||||||||||| ||| |||| ||||| | ||||||| ||||||||||||    
T  3828971 ggtttcatcacccggcaaccccggacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaag 3829070  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  3829071 aaaaatttgggcaatctgaaaattttcatacgcaaataggtc-tggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 358 - 517
Target Start/End: Original strand, 7433449 - 7433609
Alignment:
Q  358 accccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatct 456  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||| ||||||||||||    
T  7433449 accccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatct 7433548  T
Q  457 gaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcat 517  Q
     |||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  7433549 aaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 42311108 - 42310941
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||| | |||||||||||||||||||||||    
T  42311108 ggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggca 42311009  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||| || |||||||| ||||||||||    
T  42311008 atctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 321557 - 321377
Alignment:
Q  341 ggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaag 439  Q
    ||||||||| ||||||||   |||||||||| |||||||||||||||||||||||  ||||||| | |||| |||||   ||||||| | ||||||||||    
T  321557 ggtttcaccacccggcgatttcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaag 321458  T
Q  440 aaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||| ||||||| ||||||||||    
T  321457 aaaaatttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 333 - 479
Target Start/End: Complemental strand, 41972462 - 41972314
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagactt 431  Q
    ||||||| |||| ||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||| | |||| ||||||  ||||||| ||||    
T  41972462 ccaggggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacactt 41972364  T
Q  432 acaaaaagaaaaatttgg--gcaatctgaaaattctcacacgcaaatagg 479  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||    
T  41972363 acaaaaagaaaaatttggaaaaaatctgaaaattctcacacgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 333 - 479
Target Start/End: Original strand, 33489666 - 33489815
Alignment:
Q  333 ccaggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaattaacagactt 431  Q
    ||||||| ||||||||| |||||||||||||| ||||||  |||| | | ||||||||||||| ||||||||| | ||| ||||||  ||||||| ||||    
T  33489666 ccaggggcggtttcaccacccggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacactt 33489765  T
Q  432 acaaaaagaaaaatttgggc--aatctgaaaattctcacacgcaaatagg 479  Q
    || |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  33489766 actaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 31866958 - 31867014
Alignment:
Q  335 aggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  31866958 aggggcggtttcaccgcccggcgaccccgggcggtcgcccgggttcgaccgataatt 31867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 23313246 - 23313345
Alignment:
Q  362 cgggcggtcgcccgggctcgatcgataattt-ttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaa 459  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||  |||  ||||| | ||||||| | ||||||||||||||||||||||||||||||    
T  23313246 cgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 44352670 - 44352614
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataat 390  Q
    |||||| |||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  44352670 caggggcggtttcaccatccggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 52779368 - 52779302
Alignment:
Q  63 ttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgatttgaaatgaag 129  Q
    ||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||| ||||||||    
T  52779368 ttggagtgagcaacttcaataccaagaaaatatttaagctggcctaagtctttgattttaaatgaag 52779302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48901291 - 48901223
Alignment:
Q  334 caggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattag 403  Q
    |||||| |||| ||||||||||| || ||||||||| ||| ||| |||||||||||||| ||||||||||    
T  48901291 caggggcggttccaccgcccggcaactccgggcggtggccgggg-tcgatcgataatttatgcacattag 48901223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Original strand, 33489839 - 33489873
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctc 33489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Complemental strand, 41972290 - 41972256
Alignment:
Q  486 aattttatttagcacactattgacaggttcatctc 520  Q
    |||||||||||||||||||||||| ||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctc 41972256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Original strand, 25017522 - 25017550
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  25017522 aattttatttagcacactattgacaggtt 25017550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 514
Target Start/End: Complemental strand, 32379895 - 32379867
Alignment:
Q  486 aattttatttagcacactattgacaggtt 514  Q
    |||||||||||||||||||||||||||||    
T  32379895 aattttatttagcacactattgacaggtt 32379867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 355 - 520
Target Start/End: Complemental strand, 480623 - 480457
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  480623 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 480524  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  480523 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 355 - 520
Target Start/End: Original strand, 523 - 689
Alignment:
Q  355 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaa 453  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  523 gcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 622  T
Q  454 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  623 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 373 - 520
Target Start/End: Original strand, 52944 - 53092
Alignment:
Q  373 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 471  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| |    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
Q  472 caaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  53044 caaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 520
Target Start/End: Original strand, 17842 - 18009
Alignment:
Q  354 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggca 452  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||    
T  17842 ggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 17941  T
Q  453 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctc 520  Q
    ||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  17942 atctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 1259 - 1307
Alignment:
Q  336 ggggtggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 384  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  1259 ggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 1307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 194021 - 194058
Alignment:
Q  347 accgcccggcgaccccgggcggtcgcccgggctcgatc 384  Q
    ||||||||||||||||||||||||||||||||||||||    
T  194021 accgcccggcgaccccgggcggtcgcccgggctcgatc 194058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 12697 - 12631
Alignment:
Q  63 ttggaatgagctacttcaataccaagaaaatatttgagttgacctaaatccttgatttgaaatgaag 129  Q
    ||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||| ||||||||    
T  12697 ttggagtgagcaacttcaataccaagaaaatatttaagctggcctaagtctttgattttaaatgaag 12631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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