View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_low_3 (Length: 459)
Name: NF8709_low_3
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 4169686 - 4170113
Alignment:
| Q |
17 |
attgatttttgctatatcataatgaagactcatattgctaaagcatctgtaagactgtaactatcctacaactgttccgatgggatttgaacaaatttat |
116 |
Q |
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| T |
4169686 |
attgatttttgctatatcataatgaagactcatattgctaatgcatctgtaagactgtaactatcctacaactgttccgatgggatttgaacaaatttat |
4169785 |
T |
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| Q |
117 |
catcactgcttcatagcaactaggttaaatctcccatgataggtaaaatcatagtcattttcggcaagccaatcaataggttaaataatgagtaaaatgc |
216 |
Q |
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| T |
4169786 |
catcactgcttcatagcaactaggttaaatctcccatgataggtaaaatcatagtcattttcggcaagccagtcaataggttaaataatgagtaaaatgc |
4169885 |
T |
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| Q |
217 |
catataattatataagtactggctgtacttatctaagttcggaaaatttcaagactagattatgtttatatcgtatgttgaacacagtatttttccttac |
316 |
Q |
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| T |
4169886 |
catataattatataagtactagctgtacttatctacgttcggaaaatttcaagactagtttatgtttatatcgtatattgaacacagtatttttctttac |
4169985 |
T |
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| Q |
317 |
attcattgaat--agtgtatatattcaggtatacatagggtggggagaatagtgaaatggattgagaagaaatgaaattccctagctcttgacatcacaa |
414 |
Q |
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| T |
4169986 |
attcattgaatagagtgtatatattcaggtatacatagggtggggagaatagtgaaatggattgagaagaaatgaaattccctaactcttgacatcacaa |
4170085 |
T |
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| Q |
415 |
caatgtctttcattgtgtcagccttgat |
442 |
Q |
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| T |
4170086 |
caatgtctttcattgtgtcagccttgat |
4170113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 4173772 - 4173827
Alignment:
| Q |
387 |
tgaaattccctagctcttgacatcacaacaatgtctttcattgtgtcagccttgat |
442 |
Q |
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| T |
4173772 |
tgaaattccttaactcttgacatcacaacaatgtctttcattgtgtcaaccttgat |
4173827 |
T |
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