View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_low_4 (Length: 452)
Name: NF8709_low_4
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 85 - 435
Target Start/End: Original strand, 48383401 - 48383750
Alignment:
| Q |
85 |
tgttcgtcccgtgaacttagtaaaacatattttttatacgtgtagattttatatttaaag-caaacatannnnnnngggtataaataaaacattttataa |
183 |
Q |
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| T |
48383401 |
tgtttgtcccgtgaacttagtaaaacatattttttatacgtgtagattttatatttaaagtcaaacatatttttttgggtacaaataaaacatttgataa |
48383500 |
T |
|
| Q |
184 |
tagaagtgtgtataaataagttttttatactgaataaattaaatccttatctataaaatataagaattcaatcaaacaatattttgtaggcgtaacaatc |
283 |
Q |
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| T |
48383501 |
tagaagtgtgtataaataagtttcttatactgaataaattaaatccttatctatataatataagaattcaatcaaacaatattttgtaggcgtaacaatc |
48383600 |
T |
|
| Q |
284 |
aaataaaaagttaagaaatgaaccagtacgtaagctaaatgcatgatgcgtagaataattcagctctgtttctaaggtgaccttttcttttataactaga |
383 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
48383601 |
aaat--aaagttatgaaatgaaccagtacgtaagctaaatgcatgatgcgtagaataattcaactctgtttctaaggtcaccttttcttttataactaga |
48383698 |
T |
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| Q |
384 |
acatnnnnnnntttcaccataccaattatttgtcccttactccattcacttg |
435 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48383699 |
acataaaaaaatttcaccataccaattatttgtccctttctccattcacttg |
48383750 |
T |
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