View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_low_6 (Length: 362)
Name: NF8709_low_6
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 347
Target Start/End: Original strand, 28281647 - 28281992
Alignment:
| Q |
2 |
ggatttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccgatatgtatttttctgttattcacaaatttgt |
101 |
Q |
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| T |
28281647 |
ggatttcagatttgtggattagtcattcgtaattaaagcatacagggttagtgaatacattgtggaccaatatgtatttttctgttattcacaaatttgt |
28281746 |
T |
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| Q |
102 |
gtagatggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctg |
201 |
Q |
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| T |
28281747 |
gtagatggtttaacatagtattagtagattttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctg |
28281846 |
T |
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| Q |
202 |
ttctcacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaagtcataaactatttgtgcatgatgatctagtatgaaa |
301 |
Q |
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| T |
28281847 |
ttctcacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaagtcataaactatttgtgcatgatgatctagtatgaaa |
28281946 |
T |
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| Q |
302 |
attacccttactatgtttggtgtattatgtttgtatactagtattt |
347 |
Q |
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| T |
28281947 |
attacccttactatgtttggtgtattatgtttgtatactagtattt |
28281992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 28290039 - 28290174
Alignment:
| Q |
129 |
attttgtttttcaaaaactattctctgaccacaactttaacttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattt |
228 |
Q |
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| T |
28290039 |
attttgtttttcaaaaactattctctgatcacagctttga-ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattt |
28290137 |
T |
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| Q |
229 |
ttgtgaacttttaatcaatagtattggtgacttaaag |
265 |
Q |
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| T |
28290138 |
ttgtgaacttctaatcaagagtgttggtgacttaaag |
28290174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 28302890 - 28302949
Alignment:
| Q |
170 |
ttaatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacattttt |
230 |
Q |
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| T |
28302890 |
ttaatttcagggcgttctcttactgaatgctgttctcacaggttagata-tttacattttt |
28302949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 28290201 - 28290267
Alignment:
| Q |
279 |
gtgcatgatgatctagtatgaaaattacccttactatgtttggtgtattatgtttgtatactagtattt |
347 |
Q |
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| T |
28290201 |
gtgcatggtgatctagtatgta--tgaccctcaccatgtttggtgtattatgtttgtatactagtattt |
28290267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 28302980 - 28303022
Alignment:
| Q |
305 |
acccttactatgtttggtgtattatgtttgtatactagtattt |
347 |
Q |
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| T |
28302980 |
accctgactatgtttggtgtattatgcttgtatactagtattt |
28303022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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