View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_low_9 (Length: 289)
Name: NF8709_low_9
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 64 - 278
Target Start/End: Original strand, 8111989 - 8112203
Alignment:
| Q |
64 |
ctgaggtatgtttgactcttgaagattgcgtgccccggcaacccttgtgttaccatttgttgaaaataaagctagaagcataaatagaaaaatgattttt |
163 |
Q |
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| T |
8111989 |
ctgaggtatgtttgactctagaagatttcgtgccccggcaacccttgtgttaccatttgttgaaaataaagctagaagcataaatggaaaaatgaatttt |
8112088 |
T |
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| Q |
164 |
gataaattgatggaagccatcgtttgatcaagctgatgagaagaatttcaaattgatgctatttgaaaatgattttgatatgctttgtagtatgttactt |
263 |
Q |
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| T |
8112089 |
gataaattgatggaagccatcgtttgatcaagctgatgagaagaacttcaaattgatgctatttgcaaattattttgatatgctttgtagtatgttactt |
8112188 |
T |
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| Q |
264 |
cttgtgttatatgtg |
278 |
Q |
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| T |
8112189 |
cttgtgttatatgtg |
8112203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 64 - 278
Target Start/End: Original strand, 8095816 - 8096030
Alignment:
| Q |
64 |
ctgaggtatgtttgactcttgaagattgcgtgccccggcaacccttgtgttaccatttgttgaaaataaagctagaagcataaatagaaaaatgattttt |
163 |
Q |
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| T |
8095816 |
ctgaggtatgtttgactctagaagatttcgtgccccggcaacccttgtgttactatttgttgacaataaagctagaaacataaatgaaaaaatgattgtt |
8095915 |
T |
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| Q |
164 |
gataaattgatggaagccatcgtttgatcaagctgatgagaagaatttcaaattgatgctatttgaaaatgattttgatatgctttgtagtatgttactt |
263 |
Q |
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| T |
8095916 |
gacaaattgatggaagccattgtttgatcgagttgatgtgaagaacttcaaattgatgctatttgcaaatgattttgatatgctttgtagtatgttactt |
8096015 |
T |
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| Q |
264 |
cttgtgttatatgtg |
278 |
Q |
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| T |
8096016 |
cttgtgttatatgtg |
8096030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 8040869 - 8040732
Alignment:
| Q |
67 |
aggtatgtttgactcttgaagattgcgtgccccggcaacccttgtgttaccatttgttgaaaataaagctagaagcataaatagaaaaatgatttttgat |
166 |
Q |
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||||||||| |||||| ||||||||||||||||| ||||| |||| ||| || | ||| | || |||||||| ||| ||| ||||||||||||||||| |
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| T |
8040869 |
aggtatgttcgactctagaagattgcgtgccccgacaaccattgtaatactcttggctgacagtatagctagaatcattaatggaaaaatgatttttgat |
8040770 |
T |
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| Q |
167 |
aaattgatggaagccatcgtttgatcaagctgatgaga |
204 |
Q |
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| T |
8040769 |
aaattgatgtaagccatggtttaatcaagctgatgaga |
8040732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 8071815 - 8071678
Alignment:
| Q |
67 |
aggtatgtttgactcttgaagattgcgtgccccggcaacccttgtgttaccatttgttgaaaataaagctagaagcataaatagaaaaatgatttttgat |
166 |
Q |
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||||||||| |||||| ||||||||||||||||| |||| ||||||||| || ||||| |||| |||||||| ||| ||| |||||||||||||||| |
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| T |
8071815 |
aggtatgttcgactctagaagattgcgtgccccgagaaccattgtgttactcttggttgacaatatagctagaaccattaatgaaaaaatgatttttgat |
8071716 |
T |
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| Q |
167 |
aaattgatggaagccatcgtttgatcaagctgatgaga |
204 |
Q |
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| T |
8071715 |
aaattgatgtaagccatggtttaaccaagctgaggaga |
8071678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8095729 - 8095787
Alignment:
| Q |
1 |
tggtaattcaggtattttaggataatctggctttggtaattcaggtaaagaaggttttg |
59 |
Q |
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| T |
8095729 |
tggtaattcaggtacattgggaaaatctggctttggtaattcaggtaaagaaggttttg |
8095787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8111902 - 8111960
Alignment:
| Q |
1 |
tggtaattcaggtattttaggataatctggctttggtaattcaggtaaagaaggttttg |
59 |
Q |
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| T |
8111902 |
tggtaattcaggtacattgggaaaatttggctttggtaattcaggtaaagaaggttttg |
8111960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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