View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_high_6 (Length: 378)
Name: NF8710_high_6
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 111 - 370
Target Start/End: Complemental strand, 36544957 - 36544697
Alignment:
| Q |
111 |
tttatcagaacaaatagttcatgtgttttcttctaaaagaacctact-ttttggccttaccacattagcgat---gtaacaaaaataaaataaaatgcag |
206 |
Q |
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| T |
36544957 |
tttatcggaacaaatagttcatgtgttt-cttctaaaagaacctactcttttggccttaccacattagcgatattgtaacaaaaagaaaa--aaatgcag |
36544861 |
T |
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| Q |
207 |
tgtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaa |
306 |
Q |
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| T |
36544860 |
tgtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaa |
36544761 |
T |
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| Q |
307 |
ttgcaattcaattggtgattcgcatctactgtattaataattttaattgactttcatctcactc |
370 |
Q |
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| T |
36544760 |
ttgcaattcaattggtgattcgcatctactgtattaataattttaattgactttgatctcactc |
36544697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 36545019 - 36544952
Alignment:
| Q |
18 |
aaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36545019 |
aaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
36544952 |
T |
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