View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_1 (Length: 684)
Name: NF8710_low_1
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 20 - 676
Target Start/End: Original strand, 42361236 - 42361892
Alignment:
| Q |
20 |
ggcatcccttggaatcactgtttgcattcatttcgagtaaaagtggacttctaaataccaagtccaagctagatagaaagcatataattttacaagcatc |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361236 |
ggcatcccttggaatcattgtttgcattcatttcgagtaaaagtggacttctaaataccaagtccaagctagatagaaagcatataattttacaagcatc |
42361335 |
T |
|
| Q |
120 |
tactgctcaagcatcaagtaaaagcttaaaacatgaaatataaaatttgatggtttaataattcacatccaaccttcaaatttcaaataattaatttagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361336 |
tactgctcaagcatcaagtaaaagcttaaaacatgaaatataaaatttgatggtttaataattcacatccaaccttcaaatttcaaataattaatttagc |
42361435 |
T |
|
| Q |
220 |
caacgaaattcggaaatccaactataagatcggccttagcaacnnnnnnncacacactagttttcatgatacacaatatatccaaaagacttccaactta |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361436 |
caacgaaattcggaaatccaactataagatcgaccttagcaactttttttcacacactagttttcatgatacacaatatatccaaaagacttccaactta |
42361535 |
T |
|
| Q |
320 |
cacaacttgcctaaattcaaaagaatagttcaagattgtaatgtacaataaactgatgtagggaagaacatgaaatagaacaatatattcccaaacaaaa |
419 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361536 |
cacgacttgcctaaattcaaaagaatagttcaagattgtaatgtacaataaactgatgtagggaagaacatgaaatagaacaatatattcccaaacaaaa |
42361635 |
T |
|
| Q |
420 |
tgtacagaagtttcttgaagcacaacgagcatttccttcgtgaattcactgggaaagacatacaaggcgatttcatgatccaagctgcaacattctgaac |
519 |
Q |
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||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361636 |
tgtacagaagtttctcgaggcacaacgggcatttcctttgtgaattcactgggaaagacatacaaggcgatttcatgatccaagctgcaacattctgaac |
42361735 |
T |
|
| Q |
520 |
tttcaactggttggttgtctaaattatgggattctgagctttctggggtaggattgatgtcactttctgtagatgggttttccgatcctcccctatcatc |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42361736 |
tttcaactggttggttgtctaaattatgggattctgagctttctggggtaggattgatgtcactttctgtagatgggttttccgatcctcccctatcatc |
42361835 |
T |
|
| Q |
620 |
cttattcgtatcatctttaggtgatttgtcagagtcattgtcgtcatcctctctgct |
676 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42361836 |
cttattcgtatcatctttaggtgatttgtcagagtcattgtcgtcattctctttgct |
42361892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 146 - 414
Target Start/End: Original strand, 42355758 - 42356033
Alignment:
| Q |
146 |
taaaacatgaaatataaaatttgatggtttaataattcacatccaaccttcaaatttcaaataattaatttagccaacgaaattcggaaatccaactata |
245 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| |
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| T |
42355758 |
taaaacatgaaatataaaatttaatggtttaatagttcacattcaaccttcaaatttcaaataattaacttatccaaggaaatttataaatccaactata |
42355857 |
T |
|
| Q |
246 |
agatcggccttagcaacnnnnnnncacacactagttttcatgatacacaatatatccaaaagacttccaacttacacaacttgcctaaattcaaaag--- |
342 |
Q |
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| ||| |||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
42355858 |
aagtcgaccttagcaactttctttcacacactggttttcatggcacacaatatacccaaaagacttccaacttactcaacttgcctaaatttaaaagaat |
42355957 |
T |
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| Q |
343 |
aatagttcaagattgtaatgtac----aataaactgatgtagggaagaacatgaaatagaacaatatattcccaaa |
414 |
Q |
| |
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||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42355958 |
aatagttcaagattgaaatgtacaatgaatgaactgatgtagggaagaacatacaatagaacaatatattcccaaa |
42356033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 224 - 361
Target Start/End: Original strand, 42354138 - 42354276
Alignment:
| Q |
224 |
gaaattcggaaatccaactataagatcggccttagcaacnnnnnnncacacac-tagttttcatgatacacaatatatccaaaagacttccaacttacac |
322 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42354138 |
gaaattcagaaatccaactataaggtcgaccttagcaactttctttcacacacctggttttcatgatacacaatatatccaaaagacttccaacttacac |
42354237 |
T |
|
| Q |
323 |
aacttgcctaaattcaaaagaatagttcaagattgtaat |
361 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
42354238 |
aacttgcctaaattcaaaagaacagttcaagattgtaat |
42354276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 42355190 - 42355306
Alignment:
| Q |
146 |
taaaacatgaaatataaaatttgatggtttaataattcacatccaaccttcaaatttcaaataattaatttagccaacgaaattcggaaatccaactata |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| |
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| T |
42355190 |
taaaacatgaaatataaaatttaatggtttaatagttcacattcaaccttcaaatttcaaataattaacttatccaaggaaatttataaatccaactata |
42355289 |
T |
|
| Q |
246 |
agatcggccttagcaac |
262 |
Q |
| |
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| ||| |||||||||| |
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| T |
42355290 |
aagtcgaccttagcaac |
42355306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 42355049 - 42355169
Alignment:
| Q |
43 |
gcattcatttcgagtaaaagtggacttctaaataccaagtccaagctagatagaaagcatataattttacaagcatctactgctcaagcatcaagt-aaa |
141 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| ||||||||||||||| ||| ||||| |||| ||||||||| || | |||||||| ||| || ||| |
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| T |
42355049 |
gcattcattttaagtaaacgtggacgattaaatcccaagtccaagctag--agagagcatgtaatattacaagcacctccagctcaagcgtcatgtaaaa |
42355146 |
T |
|
| Q |
142 |
agc-ttaaaacatgaaatataaa |
163 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
42355147 |
agctttaaaacatgaaatataaa |
42355169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 42355617 - 42355737
Alignment:
| Q |
43 |
gcattcatttcgagtaaaagtggacttctaaataccaagtccaagctagatagaaagcatataattttacaagcatctactgctcaagcatcaagt-aaa |
141 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| ||||||||||||||| ||| ||||| |||| ||||||||| || | |||||||| ||| || ||| |
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| T |
42355617 |
gcattcattttaagtaaacgtggacgattaaatcccaagtccaagctag--agagagcatgtaatattacaagcacctccagctcaagcgtcatgtaaaa |
42355714 |
T |
|
| Q |
142 |
agc-ttaaaacatgaaatataaa |
163 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
42355715 |
agctttaaaacatgaaatataaa |
42355737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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