View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_11 (Length: 275)
Name: NF8710_low_11
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 47846572 - 47846826
Alignment:
| Q |
5 |
agtttggtgttccaatagttctttatatcattatcggttcttcccggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaacc |
104 |
Q |
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| T |
47846572 |
agttttgtgttccaatagttctttatatcattatcggttcttccgggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaacc |
47846671 |
T |
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| Q |
105 |
gaaattaataagcataattgttttgctttatacaccgatatttcagattaaatacatgttgttgtcactaaaattgatatatacatagtacacttacctg |
204 |
Q |
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| T |
47846672 |
gaaattaataagcataattgttttgctttatacaccgatatttcagattaaatacatgttgttgtcactaaaattgatatatacatagtacacttacctg |
47846771 |
T |
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| Q |
205 |
cttccaatagtaacataaaggctgcaaatgatgttatcttcttcttcggtgaaac |
259 |
Q |
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| T |
47846772 |
cttccaatagtaacataaaggctgcaaatgatgttgtcttcttcttcggtgaaac |
47846826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 40254277 - 40254339
Alignment:
| Q |
198 |
ttacctgcttccaatagtaacataaaggctgcaaatgatgttatcttcttcttcggtgaaact |
260 |
Q |
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| T |
40254277 |
ttacctgcttccaatattgacatagaggctgcaaataatgttatcttcttcttcggagaaact |
40254339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 40254009 - 40254055
Alignment:
| Q |
11 |
gtgttccaatagttctttatatcattatcggttcttcccggcaattg |
57 |
Q |
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| T |
40254009 |
gtgttccaatagttctttatatcattatccgttcgtcctggtaattg |
40254055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 4685784 - 4685724
Alignment:
| Q |
199 |
tacctgcttccaatagtaacataaaggctgcaaatgatgttatcttcttcttcggtgaaac |
259 |
Q |
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| T |
4685784 |
tacctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaac |
4685724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 4686153 - 4686087
Alignment:
| Q |
14 |
ttccaatagttctttatatcattatcggttcttcccggcaattgacccgcaatcaccgaccatctgc |
80 |
Q |
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| T |
4686153 |
ttccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacctgc |
4686087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38720108 - 38720066
Alignment:
| Q |
15 |
tccaatagttctttatatcattatcggttcttcccggcaattg |
57 |
Q |
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| T |
38720108 |
tccaatagttctttatttcattgtcggttcttcccggtaattg |
38720066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 5113624 - 5113563
Alignment:
| Q |
198 |
ttacctgcttccaatagtaacataaaggctgcaaatgatgttatcttcttcttcggtgaaac |
259 |
Q |
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|||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||| ||||| |
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| T |
5113624 |
ttacctgcttccgatactaacatagaggctgcaaataatgtcgtcttcttcttcggagaaac |
5113563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 13297844 - 13297808
Alignment:
| Q |
15 |
tccaatagttctttatatcattatcggttcttcccgg |
51 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
13297844 |
tccagtagttctttatctcattatcggttcttcccgg |
13297808 |
T |
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