View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_12 (Length: 269)
Name: NF8710_low_12
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43875159 - 43875409
Alignment:
| Q |
1 |
agtggtggatgcggtggtgtgaagggaagaagaggaagccgagacggcagcgaagaagtgtcgccggcagcgttaatgttagctgctttgaagaaatcaa |
100 |
Q |
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| T |
43875159 |
agtggtggatgcggtggtgtgaagggaagaagaggaagccgagacggcagcgaagaagtgtcgccggcagcgttaatgttagctgctttgaagaaatcaa |
43875258 |
T |
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| Q |
101 |
tggtggcctgtagtgtggagagtcctgatgatgtaatctccgccgttcatcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgt |
200 |
Q |
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| T |
43875259 |
tggtggcctgtagtgtggagagtcctgatgatgtaatctccgccgttcatcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgt |
43875358 |
T |
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| Q |
201 |
cacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggt |
251 |
Q |
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| T |
43875359 |
cacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggt |
43875409 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 39992633 - 39992535
Alignment:
| Q |
150 |
tcatccaatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttga |
248 |
Q |
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| T |
39992633 |
tcatcaaatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggctttcttggtcttcctgttgagtttga |
39992535 |
T |
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