View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_15 (Length: 240)
Name: NF8710_low_15
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32987351 - 32987129
Alignment:
| Q |
1 |
ctttatggttcacggtaagcacaaatttgcaaagagactagccatgttggccggtggaagtgggataacaccaatttaccaagtggttcaagcaattcta |
100 |
Q |
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| T |
32987351 |
ctttatggttcacggtaagcacaaatttgcaaagagactagctatgttggccggtggaagtgggataacaccaatttaccaagtggttcaagcaattcta |
32987252 |
T |
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| Q |
101 |
aaagacccagaagatctaactgaattgcatgttgtgtatgctaatcgaagcgaggatgatatattgttgagggaagagatggattcatgggctaagaagc |
200 |
Q |
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| T |
32987251 |
aaagacccagaagatctaactgaattgcatgttgtgtatgctaatcgaagcgaggatgatatattgttgagggaagagatggattcatgggctaagaagc |
32987152 |
T |
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| Q |
201 |
atgaacaattcaaagtgtggtat |
223 |
Q |
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| T |
32987151 |
atgaacaattcaaagtgtggtat |
32987129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 32957980 - 32957765
Alignment:
| Q |
8 |
gttcacggtaagcacaaatttgcaaagagactagccatgttggccggtggaagtgggataacaccaatttaccaagtggttcaagcaattctaaaagacc |
107 |
Q |
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| T |
32957980 |
gttcatggtaaacacaagtttgcaaagaggttagctatgttggccggaggaacggggataacaccgatttaccaagtggtacaagcgattctaaaagatc |
32957881 |
T |
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| Q |
108 |
cagaagatctaactgaattgcatgttgtgtatgctaatcgaagcgaggatgatatattgttgagggaagagatggattcatgggctaagaagcatgaaca |
207 |
Q |
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| T |
32957880 |
tgaaggatctaactgaaatatatgttgtgtatgctaatcgaagcgaggatgatatattgttgagggaagagatggattcttggtctaagaagcatgaacg |
32957781 |
T |
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| Q |
208 |
attcaaagtgtggtat |
223 |
Q |
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| T |
32957780 |
attcaaagtgtggtat |
32957765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 24861308 - 24861237
Alignment:
| Q |
113 |
gatctaactgaattgcatgttgtgtatgctaatcgaagcgaggatgatatattgttgagggaagagatggat |
184 |
Q |
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|||| ||||||| || ||||||| ||||| || || | ||||||||||||||||||||||||||| ||||| |
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| T |
24861308 |
gatcaaactgaaatgtatgttgtttatgcaaaccggacggaggatgatatattgttgagggaagagttggat |
24861237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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