View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_2 (Length: 551)
Name: NF8710_low_2
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 33495451 - 33495176
Alignment:
| Q |
16 |
tgttttgctaagatgacgaaacaaaataatgcagtaacaccagaatttaagtcatgtattaacaatcttatctctactgtcgtgttaccaagtgcagcta |
115 |
Q |
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| T |
33495451 |
tgttttgctaagatgacgaaacaaaataatgcagtaacaccagaatttaagtcatgtattaacaatcttatctctactgtggtgttaccaagtgcagcta |
33495352 |
T |
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| Q |
116 |
ccgtgccagaatctatggctttgattaatgggtttttgggtttttctcataagaattttactaagagattagaagaaagtaaagttaatgcttggattga |
215 |
Q |
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| T |
33495351 |
ccgtgccagaatctatggctttgattaatgggtttttgggtttttctcgtaagaattttactaagagattagaagaaagtaaagttaatgcttggattga |
33495252 |
T |
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| Q |
216 |
ttcaatgagagctgcttctccaactcgtgtcaaatcttcagaaaatcaggaaaaatgttcttggattgtaagcata |
291 |
Q |
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| T |
33495251 |
ttcaatgagagctgcttctccaactcgtgtcaaatcttcagaaaatcaggaaaaatgttcttggattgtaagcata |
33495176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 331 - 537
Target Start/End: Complemental strand, 33495119 - 33494913
Alignment:
| Q |
331 |
aatttttagttgacttcttattatttgtgcttgcagctttatcatccttcagcactgaaattgtttgatcaaatattgtttagtgcaaaaggaaaacaga |
430 |
Q |
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| T |
33495119 |
aatttttagttgacttcttattatttgtgcttgcagctttatcacccttcagcactgaaattgtttgatcaaatattgtatagtgcaaaaagaaaacaga |
33495020 |
T |
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| Q |
431 |
tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaaggtatttttatttatttttccttt |
530 |
Q |
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| T |
33495019 |
tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaaggtatttttatttatttttccttt |
33494920 |
T |
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| Q |
531 |
gtgatgt |
537 |
Q |
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| T |
33494919 |
gttatgt |
33494913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 37980434 - 37980388
Alignment:
| Q |
208 |
tggattgattcaatgagagctgcttctccaactcgtgtcaaatcttc |
254 |
Q |
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| T |
37980434 |
tggattgattctatgagagcttcttctccaactcatgtcaaatcttc |
37980388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 26144144 - 26144090
Alignment:
| Q |
437 |
tttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagc |
491 |
Q |
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| T |
26144144 |
tttttcttgactatgatggaactctctccccaattgtagcagatccagataaagc |
26144090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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