View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_3 (Length: 520)
Name: NF8710_low_3
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Original strand, 12270833 - 12271293
Alignment:
| Q |
14 |
agatgaaggtacacgatcaagagtttaaactttaattaaaacgtttattcttcttttttcttcttctattataacctttgacgaaatgaatgtgagaaaa |
113 |
Q |
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| T |
12270833 |
agatgaaggtacacgatcaagagtttaaactttaattaaaacgtttattcttcttttttctacttctattataacctttgacgaaatgaatgtgagaaaa |
12270932 |
T |
|
| Q |
114 |
ttaaataaaaaccctaaactgttgtacaaggcctttattaatttgagctacattaaatatttaacgttgcacgtttcccaagtaaaaaacgcgttttctt |
213 |
Q |
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| T |
12270933 |
ttaaataaaaaccctaaactgatgtacaaggtctttattaatttgagctacattaaatatttaacgttgcacgtttcccaagtaaaaaacgcgttttctt |
12271032 |
T |
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| Q |
214 |
ttgggtttttgcattaaaaatctttcagctatgaacaaacatctattactactaggaagtgataagaaaagagttttcaattttgatttcataatagtta |
313 |
Q |
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| T |
12271033 |
ttgggtttttgcattaaaaatctttcagctatgaacaaacatctattactactaggaagtgataagaaaagagttttcaattttgatttcat-atagtta |
12271131 |
T |
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| Q |
314 |
tggttattggtgttgtccatcatatacagtctgtattccattaatgtaacgcatttaactttacctgtcacatgtggtctccaaacgctactcatattta |
413 |
Q |
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| T |
12271132 |
tggttattggtgttgtccatcatatacagtctgtattccattaatgtaacgcatttaaccttacctgtcacatgtggtctccaaacgctactcatattta |
12271231 |
T |
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| Q |
414 |
ttgctatatatcatcattactagggttacacttcaaacgggtattaatttttcaaaaccatt |
475 |
Q |
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| T |
12271232 |
ttgctatatatcatcattactagggttacacttcaaacgggtattaatttttcaaaaccatt |
12271293 |
T |
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