View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_4 (Length: 470)
Name: NF8710_low_4
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 40962184 - 40962564
Alignment:
| Q |
17 |
cagataagcctaaagcactttaggccaattaaacctttgggatctggagataccggaaggtttattgtttttctctttttctccttagttctcttttcca |
116 |
Q |
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| T |
40962184 |
cagataagcctaaagcactttaggccaattaaacctttgggatctggagataccggaaggtttatttttttt-----------------tctcttttcca |
40962266 |
T |
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| Q |
117 |
agtacaaactacatacatgtccatgatattgtcacttccagtgattctacaatttccttaatggaacttgtgaatatataaacgccttatcaatgaattg |
216 |
Q |
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| T |
40962267 |
agtacaaactacatacatgtccatgatattgtcacttctagtaattctacaatttccttaatggaacttgtgaatatataaacgccttatcaatgaattg |
40962366 |
T |
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| Q |
217 |
gtctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatgatatgttattggctttcagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40962367 |
gtctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatgatatgttatcggctttcagt |
40962466 |
T |
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| Q |
317 |
gtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggttctgagtttgat |
414 |
Q |
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| T |
40962467 |
gtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggtgttatgctcaatcgcaataaggttctgagtttgat |
40962564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 452
Target Start/End: Original strand, 40962580 - 40962608
Alignment:
| Q |
424 |
ttattaattgaagcatctatgttcatgat |
452 |
Q |
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| T |
40962580 |
ttattaattgaagcatctatgttcatgat |
40962608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 22798227 - 22798317
Alignment:
| Q |
312 |
tcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggt |
402 |
Q |
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| T |
22798227 |
tcagtgtccatcttgtggagctatgtggaactgatcaacattttgccatgaaggctatggagaaggctgttatgctcaaccgtaataaggt |
22798317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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