View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_5 (Length: 434)
Name: NF8710_low_5
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 10504122 - 10503715
Alignment:
| Q |
18 |
atttctcacattttatttgtagatgattgnnnnnnnnnnnncagggaagcccaggtaatgaagaatatttctagtataagaaagtttattatannnnnnn |
117 |
Q |
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| T |
10504122 |
atttctcacattttatttgcagatgattgtttttattttttcagggaagcacaggtaatgaagaatatctctagtataagaaattttattagattttttt |
10504023 |
T |
|
| Q |
118 |
accacgactaaatacatctatttttatttaaattgatnnnnnnnngtttaaaaaggttcaccttatttatttatttttcaccgaaggtttaccttannnn |
217 |
Q |
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| T |
10504022 |
accacgattaaatacatctatttttatttaaattgataaaaaaaagtttaaaaaggttcaacttatttatttatttttcaccgaaggtttaccttatttt |
10503923 |
T |
|
| Q |
218 |
nnnaatatacaacaaaactggtacatgccctctttagagaaatgggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgc |
317 |
Q |
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| T |
10503922 |
t--aatatacaacaaaactggtacatgccctatttagagaaataggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgc |
10503825 |
T |
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| Q |
318 |
ctctgtgaagtgggaaccatcccaaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatgatttctccacag |
417 |
Q |
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| T |
10503824 |
ttctgtgaagtgggaaccatcccaaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatggtttctccacag |
10503725 |
T |
|
| Q |
418 |
ccaacacgaa |
427 |
Q |
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| T |
10503724 |
ccaacacgaa |
10503715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 416
Target Start/End: Complemental strand, 10486391 - 10486215
Alignment:
| Q |
240 |
acatgccctctttagagaaatgggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcc |
339 |
Q |
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| T |
10486391 |
acatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcc |
10486292 |
T |
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| Q |
340 |
caaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatgatttctccaca |
416 |
Q |
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| T |
10486291 |
catattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccaca |
10486215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 427
Target Start/End: Complemental strand, 10500831 - 10500644
Alignment:
| Q |
240 |
acatgccctctttagagaaatgggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcc |
339 |
Q |
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| T |
10500831 |
acatgccctattgagtggaataggaggatccgtaaaagctccattagagatttgatcaaagacaatcttgttagctgcctctgtgtaatgagtaccatcc |
10500732 |
T |
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| Q |
340 |
caaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatgatttctccacagccaacacgaa |
427 |
Q |
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| T |
10500731 |
catattattctagttgatggttttttacatgaacccacaacagtgtttgtaccatttatgtttatggttgctccacaaccagcacgaa |
10500644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 424
Target Start/End: Complemental strand, 10509311 - 10509127
Alignment:
| Q |
240 |
acatgccctctttagagaaatgggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcc |
339 |
Q |
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| T |
10509311 |
acatgccctatctagagaaataggaggatcattgaaaactccagtaaggatttgagaaaagacaatctcgttagctgcttctgtgtaatgaacaccatcc |
10509212 |
T |
|
| Q |
340 |
caaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatgatttctccacagccaacac |
424 |
Q |
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| T |
10509211 |
catatgattctagttgatggatttttgcatgaacctgcaacaatttttgtaccatttatgtttatggatgctccacaaccaacac |
10509127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 10544988 - 10545047
Alignment:
| Q |
258 |
aatgggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgc |
317 |
Q |
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| T |
10544988 |
aatgggaggatctgagaaagccccagtagaaatttgatcaaagataaatttgttagctgc |
10545047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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