View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8710_low_6 (Length: 385)
Name: NF8710_low_6
Description: NF8710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8710_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 22345661 - 22345320
Alignment:
| Q |
18 |
accatgtgcagtaacaagaaaaagtatggatatttctgaatgtacaaggattgttttagataaaattcaaagatttgagccagaacatgctatgaagatc |
117 |
Q |
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| T |
22345661 |
accatgtgcagtaacaagaaaaagtatggatatttctgaatgtacaaggattgttttagataaaattcaaagatttgagccagaacatgctacgaagatc |
22345562 |
T |
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| Q |
118 |
attggatatctccttatgcaagataacggcgagcaagagattgctaaattagcttcgtttccggataatttgatccgtgaagttgcccttaaggccagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22345561 |
attggatatctccttatgcaagataacggcgagcaagagattgctaaattagcttcatttccggataatttgatccgtgaagttgcccttaaggccagaa |
22345462 |
T |
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| Q |
218 |
ccgagcttcaaaagatggctactagatcggtaatctcctccggaaattcttcaccggcaagttttcaggttcactctccctattacaatcatggtaatac |
317 |
Q |
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| T |
22345461 |
ctgagcttcaaaagatggctaccagatcggtaatctcgtccggaaattcttcaccggcaagttttcaggttcactctccctattacaatcatggtaatac |
22345362 |
T |
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| Q |
318 |
tagtccagaatttatgagaataggcaccactgaacaccaaac |
359 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
22345361 |
tagtccagaatttatgacaataggcaccactgaacatcaaac |
22345320 |
T |
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