View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8711_low_2 (Length: 381)
Name: NF8711_low_2
Description: NF8711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8711_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 31263890 - 31264265
Alignment:
| Q |
1 |
aataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcgatatgatctatacaattgattaacgatgacaatagtataaaca |
100 |
Q |
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| T |
31263890 |
aataatattaatgcaacttaataaattttcaacaattattgtttacgcttaattgcgatatgatctatacaattgattaacgatgacaatagtataaaca |
31263989 |
T |
|
| Q |
101 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttgaggagatagtcctaacaata |
200 |
Q |
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| T |
31263990 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttgaggagatagtcctaacaata |
31264089 |
T |
|
| Q |
201 |
tttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggagatgc |
300 |
Q |
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| T |
31264090 |
tttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggagatgc |
31264189 |
T |
|
| Q |
301 |
tctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttctcac |
376 |
Q |
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| T |
31264190 |
tctattccatgtctttcaactttccttgaattcagacttctgttgcgacaaatttgcatttgagtgttcttgtcac |
31264265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 370
Target Start/End: Original strand, 12212406 - 12212663
Alignment:
| Q |
101 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
199 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
12212406 |
gatggatgaggaaatataaaaaccaaggtagaataattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
12212504 |
T |
|
| Q |
200 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
298 |
Q |
| |
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| ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| |||||||| |
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| T |
12212505 |
a-----------gatagagat--agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagat |
12212591 |
T |
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| Q |
299 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
370 |
Q |
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| T |
12212592 |
gctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttct |
12212663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 370
Target Start/End: Complemental strand, 13815186 - 13814928
Alignment:
| Q |
101 |
gatgcatgaggaaatataa-aaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaa |
198 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||||||||||||| ||| ||||| | ||||||||||||||||| |
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| T |
13815186 |
gatggatgaggaaatataacaaaccaaggtagaacatttatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaa |
13815088 |
T |
|
| Q |
199 |
tatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggaga |
297 |
Q |
| |
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|| ||| ||||| |||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||| |
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| T |
13815087 |
ta-----------gatggagat--agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggaga |
13815001 |
T |
|
| Q |
298 |
tgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
370 |
Q |
| |
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| T |
13815000 |
tgctctattccacgtaattcaacttcccttgaatttagacatctgttgagacgaatttgcatctgattgttct |
13814928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 370
Target Start/End: Original strand, 22144589 - 22144846
Alignment:
| Q |
101 |
gatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga-ggagatagtcctaacaat |
199 |
Q |
| |
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|||| ||||||| ||||| |||| || |||||||||||| ||||| ||||| ||||||||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
22144589 |
gatggatgaggacatatataaactaaggtagaacaattatatagatggatagttgaaatggtacaatacatgt-ggtttaatggagatagtcctaacaat |
22144687 |
T |
|
| Q |
200 |
atttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagat |
298 |
Q |
| |
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| ||| ||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| |||||||| |
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| T |
22144688 |
a-----------gatggagat--agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagat |
22144774 |
T |
|
| Q |
299 |
gctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttct |
370 |
Q |
| |
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||||||||||| || |||||||| | ||||||| |||| | ||||||||| ||||||||||||| |||||| |
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| T |
22144775 |
gctctattccacgtaattcaacttcccttgaatttagacatttgttgagacgaatttgcatctgattgttct |
22144846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 15852342 - 15852247
Alignment:
| Q |
86 |
acaatagtataaacagatgcatgaggaaatataaaaaccaatgtagaacaattagatagaatgatagatgaaatggtacaatagatgaaggtttga |
181 |
Q |
| |
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||||| |||||||| |||| |||| |||||||||||||||| |||||||||||| ||| | ||||| ||||||||||||||| ||| ||||||| |
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| T |
15852342 |
acaatggtataaacggatggatgatgaaatataaaaaccaaggtagaacaattatatacatggatagttgaaatggtacaatacatgtgggtttga |
15852247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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