View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8711_low_4 (Length: 367)
Name: NF8711_low_4
Description: NF8711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8711_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 7458129 - 7457794
Alignment:
| Q |
20 |
ttaccacttttaatttgtctgtccttctaaaaagttctctctagctaatgtcttgagtt---tgattgattaatggtaagaacgtggaatcaattaattt |
116 |
Q |
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| T |
7458129 |
ttaccacttttaatttgtctgtccttctaaaaagttctctctagctaatgtcttgagttatttgattgattaatggtaagaacgtggaatcaattaattg |
7458030 |
T |
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| Q |
117 |
gccacaaaaattggaagnnnnnnnnnngcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctct |
216 |
Q |
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| T |
7458029 |
gccacaaaaattggaagaaaaaaaa--gcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctct |
7457932 |
T |
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| Q |
217 |
cactcaaatcaagtctagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttg |
316 |
Q |
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| T |
7457931 |
cactcaaatcaagtctagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttg |
7457832 |
T |
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| Q |
317 |
cagatgatgacttttttctctttttaattctggtatct |
354 |
Q |
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| T |
7457831 |
cagatgatgacttttttctctttttaattctggtatct |
7457794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 7442704 - 7442585
Alignment:
| Q |
166 |
tttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtctagtctttgtttgttcttgtaagcaattatcaaa |
265 |
Q |
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| T |
7442704 |
tttctcattccctaaccctaaccaatgagagacatctttttaatctgctctcactcaaatcaagtctagtctttctttcttcttgtaagcaatgatcaaa |
7442605 |
T |
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| Q |
266 |
attagcttatcttttagggt |
285 |
Q |
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| T |
7442604 |
attagcttatcttttagggt |
7442585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 7441984 - 7441943
Alignment:
| Q |
279 |
ttagggttccataaagagacaagggttgttggtgtttgcaga |
320 |
Q |
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| T |
7441984 |
ttagggttccctaaagagaccagggttgttggtgtttgcaga |
7441943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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