View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8711_low_5 (Length: 306)
Name: NF8711_low_5
Description: NF8711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8711_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 41780126 - 41780422
Alignment:
| Q |
1 |
agagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgt |
100 |
Q |
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| T |
41780126 |
agagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgt |
41780225 |
T |
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| Q |
101 |
catttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatgtgac |
200 |
Q |
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| T |
41780226 |
catttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatgtgac |
41780325 |
T |
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| Q |
201 |
agccagagagtattattatatttccttcttctctcttaa-------ttttaagattatcacgatggcattcaattgaggaatatcacaccttatttt |
290 |
Q |
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| T |
41780326 |
agccaaagagtattattatatttccttcttctctcttaattttaacttttaagattatcacgatggcatccaattgaggaatatcacaccttatttt |
41780422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 56 - 290
Target Start/End: Original strand, 41786742 - 41786986
Alignment:
| Q |
56 |
aataaatgtaaaatataccttatgatagaatattccaaaagatgtcatttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaact |
155 |
Q |
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| T |
41786742 |
aataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttttcttttcctaact |
41786841 |
T |
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| Q |
156 |
tgaggaacctttcatttatgat----tatgtattttaaagtgatg---tgacagccagagagtatta-ttatatttccttct--tctctcttaattttaa |
245 |
Q |
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| T |
41786842 |
tcaggaacctttcatttatgattatatatgtactttaaagtgatgataagacaaccgaagagtattatttatatttccttcttctctctcttaattttaa |
41786941 |
T |
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| Q |
246 |
gattatcacgatggcattcaattgaggaatatcacaccttatttt |
290 |
Q |
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| T |
41786942 |
gagtatcacgatggcatccaattgaggaatatcacaccttatttt |
41786986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 41791544 - 41791833
Alignment:
| Q |
1 |
agagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaat-aataaatgt-aaaatataccttatgatag--aatattccaaaag |
96 |
Q |
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| T |
41791544 |
agagtacgaaaatgccctacaaaggagaatgagttattgtccaagaagctaaaataaataaatgtgaaaatataccttatgataggagatattccaaaag |
41791643 |
T |
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| Q |
97 |
atgtcatttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatg |
196 |
Q |
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| T |
41791644 |
atgtcatttaaatattgtatttgaacccaaaaa-------aaaaattcttttccaaagttcaggaacctttcatttatgattatgtaatttaaagtgatg |
41791736 |
T |
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| Q |
197 |
tgacag---ccagagagtatta-ttatatttccttcttctctcttaattttaagattatcacgatggcattcaattgaggaatatcacaccttatttt |
290 |
Q |
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| T |
41791737 |
ataaagacaacaaagtgtattatttatatttccttcttctctcttaattttagaagtatcacgatggca-gcaattgaagaatatcacaccttatttt |
41791833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41785690 - 41785739
Alignment:
| Q |
1 |
agagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagct |
50 |
Q |
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| T |
41785690 |
agagtacaaaaatgccccgtaaaagagaatgagttattatccaagaagct |
41785739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 1681276 - 1681104
Alignment:
| Q |
2 |
gagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgtc |
101 |
Q |
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| T |
1681276 |
gagtacaaaaatgcatggcaaagaagaatgatttattgt-------gctagaaaaataaatgtgaaatatgcct-atgatagatttttccaaaatatgtc |
1681185 |
T |
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| Q |
102 |
atttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgta |
183 |
Q |
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| T |
1681184 |
atttaaatattgtatgggcacccaaataattaatt-ttttttcttttcctaatttccggaacctttcatttatgattatgta |
1681104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 15584239 - 15584289
Alignment:
| Q |
56 |
aataaatgtaaaatataccttatgatagaatattccaaaagatgtcattta |
106 |
Q |
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| T |
15584239 |
aataaatgtacaatatatcttatgatagaatatttcatgagatgtcattta |
15584289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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