View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8711_low_6 (Length: 303)
Name: NF8711_low_6
Description: NF8711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8711_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 51169538 - 51169655
Alignment:
| Q |
180 |
gacaaccttaaataattaggtatttggtattatgcctaataaaattttcaactatatgaattaatttttcacatctattcaatatcttattttctatcta |
279 |
Q |
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| T |
51169538 |
gacaaccttaaataattaggtatttggtattatgcctgataaaattttcaactatatgaattaatttttcacatctattcaatattttattttctatcta |
51169637 |
T |
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| Q |
280 |
tctttctcttcttctcac |
297 |
Q |
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| T |
51169638 |
tctttctcttcttatcac |
51169655 |
T |
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Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 51169393 - 51169487
Alignment:
| Q |
18 |
aaaataataaagcataacatttctttcacgtaaatttgaaagaa---ggtttttaaagatggggaattatttggtgctcataaggtagattaacc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51169393 |
aaaataataaagcataacatttctttcacgtaaatttgaaagaataaggtttttaaagatggggaattatttggtgctcataaggtagattaacc |
51169487 |
T |
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