View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8711_low_8 (Length: 291)
Name: NF8711_low_8
Description: NF8711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8711_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1220972 - 1221204
Alignment:
| Q |
1 |
agggagctttattaactcctacgtaattgtttctagtttaggcttaggatcttttttattgcgaatcgaatagacataggaggttactaaggacgttcag |
100 |
Q |
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| T |
1220972 |
agggagctttattaactcctacgtaattgtttctagtttaggcttaggatcttttttattgcgaatcgaataaacataggaggttactaaggacgttcag |
1221071 |
T |
|
| Q |
101 |
aaaagctacgaccaagtggtcatcaaatttggaggctctacatacaatcatgttatatcccatattagcaacaatggctttaatttgctaaaccnnnnnn |
200 |
Q |
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| T |
1221072 |
aaaagctacgaccaagtggtcatcgaatttggaggctctacatacaatcatgttatatcccatattagcaacaatggctttaatttgctaaacctttttt |
1221171 |
T |
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| Q |
201 |
ngtcgacatgggggatttatgaggattctgata |
233 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
1221172 |
tgtctacatgggggatttatgaggattctgata |
1221204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 1221304 - 1221349
Alignment:
| Q |
231 |
ataatgataaaggttgcataccatcctctataatgatcattgttga |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1221304 |
ataatgataaaggttgcataccatcctctataatgatcattgttga |
1221349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41987541 - 41987318
Alignment:
| Q |
1 |
agggagctttattaactcctacgtaattgtttctagtttaggcttaggatcttttttattgcgaatcgaatagacataggaggttactaaggacgttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || ||| |||| |
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| T |
41987541 |
agggagctttattaactcctacgtaattgtttctagtttaggcttaggatcttttttattgcgaatcgaataaacataggaggttgctgagtacgctcag |
41987442 |
T |
|
| Q |
101 |
aaaagctacgaccaagtggtcatcaaatttggaggctctacatacaatcatgttatatcccatattagcaacaatggctttaatttgctaaaccnnnnnn |
200 |
Q |
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||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
41987441 |
aaaagctacgatcaagtggtcatcgaatttggaggctc----taaaatcatgttatatcccatattagcgacaatggc-----tttgctaaacctttttt |
41987351 |
T |
|
| Q |
201 |
ngtcgacatgggggatttatgaggattctgata |
233 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
41987350 |
tgtctacatgggggatttatgaggattctgata |
41987318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 41987219 - 41987174
Alignment:
| Q |
231 |
ataatgataaaggttgcataccatcctctataatgatcattgttga |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41987219 |
ataatgataaaggttgcataccatcctctataatgatcattgttga |
41987174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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