View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8712_high_1 (Length: 451)
Name: NF8712_high_1
Description: NF8712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8712_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 6215724 - 6215363
Alignment:
| Q |
19 |
gtttctgacacaaatgttttggtgaatggtagattctgtcatgnnnnnnnngtgaacatggtttctttcttattttgnnnnnnnccacttgagaactgtt |
118 |
Q |
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| T |
6215724 |
gtttctgacacaaatgttttggtgaatggtagattctgtcatgaaaaaaaagtgaacatggtttctttcttattttgaaaaaaaccacttgagaactgtt |
6215625 |
T |
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| Q |
119 |
gttatcaatatctatccattacttcaatcttgtttgttttgttcaatgaagatgtttagaggagaagtttttctatgttttgttacattgttcatgtttt |
218 |
Q |
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| T |
6215624 |
gttatcaatatctatccattacttcaatcttgtttgttttgttcaatgaagatgtttagaggagaagtttttctatgttttgttacattgttcatgtttt |
6215525 |
T |
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| Q |
219 |
ggagttgtgcaaatgctttgctttctcctaagggaattaactttgaaggtatacattcaaattttataattttatagtatgttcggattgatagtgagtt |
318 |
Q |
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| T |
6215524 |
ggagttgtgcaaatgctttgctttctcctaagggaattaactttgaaggtatac-ttcaaattttataattttatagtatgttcgaattgatagtgagtt |
6215426 |
T |
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| Q |
319 |
tagccaaattacggtgacactgtgattttgttacggtggcttactgtgattctgacaatctta |
381 |
Q |
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| T |
6215425 |
tagccaaattacggtgacactgtgattttgttacggtggcttactgtgattctgacaatctta |
6215363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 6215364 - 6215329
Alignment:
| Q |
403 |
taagtgtttaattttgaaatgaatttttctctgtct |
438 |
Q |
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| T |
6215364 |
taagtgtttaattttgaaatgaatttttctctgtct |
6215329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 39553896 - 39553842
Alignment:
| Q |
296 |
tatgttcggattgatagtgagtttagccaaattacggtgacactgtgattttgtt |
350 |
Q |
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| T |
39553896 |
tatgtttggattgacagtgagtttggtaaaatcacggtgacactgtgattttgtt |
39553842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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