View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8712_low_2 (Length: 283)
Name: NF8712_low_2
Description: NF8712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8712_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 9784118 - 9783865
Alignment:
| Q |
16 |
agtttaagatgttttcatgtaaatgcagcagggtgtgatnnnnnnnnccaagacagtaagaccttaaaatagaagcttataatcaataagttgatgtcat |
115 |
Q |
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| T |
9784118 |
agtttaagatgttttcatgtaaatgcagtagggtgtgataaaaaaa-ccaagacagtaagaccttaaaatagaagcttataatcaataagttgatgtcat |
9784020 |
T |
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| Q |
116 |
tagtcgttagatttatgcaccatatattaggccttaagtgattgacaggcacacacatgaataacttcagtattagagactgagaaaggagactgatata |
215 |
Q |
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| T |
9784019 |
tagtcgttagatttatgcaccatatattaggccttaagtaattgacaggcacacacatgaataactttagtattagaga-------------ctgatata |
9783933 |
T |
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| Q |
216 |
tttataaaatttcgaagcaaaaccaatcaccagaaccttaaataatttcctagtgttaaatgaaatac |
283 |
Q |
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| T |
9783932 |
tttataaattttcgaagcaaaaccaatcactagaaccttaaataatttcctagtgttaaatgaaatac |
9783865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 30035805 - 30035606
Alignment:
| Q |
16 |
agtttaagatgttttcatgtaaatgcagca-gggtgtgatnnnnnnnnccaagacagtaagaccttaaaatagaagcttataatcaataagttgatgtca |
114 |
Q |
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| T |
30035805 |
agtttaagatgttttcatgtgaatgcagcaagggtgcgattgaaaaa-ccaagacagtaagaccttaaaacagaagcttataatcaataagttgatatca |
30035707 |
T |
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| Q |
115 |
ttagtcgttagatttatgcaccatatattagg-ccttaagtgattgacaggcacacacatgaataacttcagtattagagactgagaaaggagactgata |
213 |
Q |
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| T |
30035706 |
ttagtcgttagatttatgcaccatatattaggtgcttaagtaattgacaggcacacacatgaataactttagtattggagactgagaaagtagattgata |
30035607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 30151546 - 30151347
Alignment:
| Q |
16 |
agtttaagatgttttcatgtaaatgcagca-gggtgtgatnnnnnnnnccaagacagtaagaccttaaaatagaagcttataatcaataagttgatgtca |
114 |
Q |
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| T |
30151546 |
agtttaagatgttttcatgtgaatgcagcaagggtgcgattgaaaaa-ccaagacagtaagaccttaaaacagaagcttataatcaataagttgatatca |
30151448 |
T |
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| Q |
115 |
ttagtcgttagatttatgcaccatatattagg-ccttaagtgattgacaggcacacacatgaataacttcagtattagagactgagaaaggagactgata |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||||| |
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| T |
30151447 |
ttagtcgttagatttatgcaccatatattaggtgcttaagtaattgacaggcacacacatgaataactttagtattggagactgagaaagtagattgata |
30151348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 24936435 - 24936385
Alignment:
| Q |
81 |
aaaatagaagcttataatcaataagttgatgtcattagtcgttagatttat |
131 |
Q |
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| T |
24936435 |
aaaattgaagcttataatcattaacttgatatcattagtcattagatttat |
24936385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 29154238 - 29154200
Alignment:
| Q |
16 |
agtttaagatgttttcatgtaaatgcagcagggtgtgat |
54 |
Q |
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| T |
29154238 |
agtttgagatgttttcatgtgaatgcagcagggtgtgat |
29154200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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