View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8712_low_3 (Length: 250)
Name: NF8712_low_3
Description: NF8712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8712_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9783866 - 9783705
Alignment:
| Q |
1 |
acagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccatcaagcaactgtgatcatattcatgccattaatctttgatgactgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9783866 |
acagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccatcaagcaactgtgatcatattcatgccattaatctttgatgactgctt |
9783767 |
T |
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| Q |
101 |
tcaaaacccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacattt |
163 |
Q |
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||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9783766 |
tcagaacccttttcgcacaagccagaatgatc-gttagacaaaatctggcaatcaacacattt |
9783705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 9782689 - 9782645
Alignment:
| Q |
193 |
tagtgtatgtacacatatctagctgaattccttcgtctttcatct |
237 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9782689 |
tagtgtatgtacacatatctggctgaattccttcgtctttcatct |
9782645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30151287 - 30151126
Alignment:
| Q |
1 |
acagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccatcaagcaactgtgatcatattcatgccattaatctttgatgactgctt |
100 |
Q |
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|||| |||||||||||| |||||||||| ||||| ||| ||| ||||||||| |||||| || ||||||||||||||||| |||||||||| || || |
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| T |
30151287 |
acaggtttaccatcaaactcagaaacaaactaagcattaatc-atacaaccaacaagcaccttcaatcatattcatgccatttctctttgatgattgttt |
30151189 |
T |
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| Q |
101 |
tcaaaacccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacattt |
163 |
Q |
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|||||| | |||| ||| ||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
30151188 |
tcaaaatctttttcgcaaaagccaggttgatcagttagacaaaatcgggcaatcaacacattt |
30151126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 30035546 - 30035403
Alignment:
| Q |
1 |
acagatttaccatcaaattcagaaacaagctaaggattcatccatacaaccatcaagcaactgtgatcatattcatgccattaatctttgatgactgctt |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| ||| ||| ||||||||| |||||| || ||||||||||||||||| |||||||||| || || |
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| T |
30035546 |
acaggtttaccatcaaactcagaaacaaactaagcattaatc-atacaaccaacaagcaccttcaatcatattcatgccatttctctttgatgattgttt |
30035448 |
T |
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| Q |
101 |
tcaaaacccttttggcacaagccagaacgatcagttagacaaaat |
145 |
Q |
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|||||| | |||| ||| ||||||| ||||||||||||||||| |
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| T |
30035447 |
tcaaaatctttttcgcaaaagccaggttgatcagttagacaaaat |
30035403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 29948403 - 29948503
Alignment:
| Q |
62 |
tgtgatcatattcatgccattaatctttgatgactgctttcaaaacccttttggcacaagccagaacgatcagttagacaaaatctggcaatcaacacat |
161 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
29948403 |
tgtgatcatattcatgccatttctcttggatgacaattttcaaaaccttttttgcacaagccagtttgattagttacacaaaatctggcaatcaacacat |
29948502 |
T |
|
| Q |
162 |
t |
162 |
Q |
| |
|
| |
|
|
| T |
29948503 |
t |
29948503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 30053575 - 30053533
Alignment:
| Q |
195 |
gtgtatgtacacatatctagctgaattccttcgtctttcatct |
237 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
30053575 |
gtgtatgtaaacatatctggctgaattccttcgtctttcatct |
30053533 |
T |
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