View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8713_high_1 (Length: 487)
Name: NF8713_high_1
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 32 - 477
Target Start/End: Original strand, 33642179 - 33642624
Alignment:
| Q |
32 |
ctcatgctcattatatggtggtactctgatactaatatagataaagacctatcttattttttctttatgagggtggagattttctatatagaaatttgag |
131 |
Q |
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| T |
33642179 |
ctcatgctcattatatggtggtactctgatactaatatagataaagacctatcttattttttctctatgagggtggagattttctatttagaaatttgag |
33642278 |
T |
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| Q |
132 |
gtctatgttgatgaaattgatttctttgttttcagtgttgcttggttgatcggttgggccttgttactggaatatacgattggtagcgctgctgttgctc |
231 |
Q |
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| T |
33642279 |
gtctatgttgatgaaattgatttctttgttttcagtgttgcttggttgatcggctgggccttgttactggaatatacgattggtagcgctgctgttgctc |
33642378 |
T |
|
| Q |
232 |
gtggcataacccctaatcttgtatggtgtgcttttaactcttctgttgagtttttgcttgctttggagtatgtttatttattacatctatagtccaactt |
331 |
Q |
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| T |
33642379 |
gtggcataacccctaatcttgtatggtgtgcttttaactcttctgttgagtttttgcttgctttggagtatgtttatttattacatctatagtccaactt |
33642478 |
T |
|
| Q |
332 |
taacttcttaattcgttagtgagtgaaccaaaaaggcaacatgacctgtcattcgcaaaatcactttatttcttcaacatcacagcaaataaagtgaata |
431 |
Q |
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| T |
33642479 |
taactttttaattcgttagtgagtgaaccaaaaaggcaacatgacctgtcattcgcaaaatcactttatttcttcaacatcacagcaaataaagtgaata |
33642578 |
T |
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| Q |
432 |
gtttggtgtatgaatgtgaaaatcatctgtttttatttctctgctt |
477 |
Q |
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| T |
33642579 |
gtttggtgtatgaatgtgaaaatcatctgtttttatttctctgctt |
33642624 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 9657922 - 9657846
Alignment:
| Q |
168 |
gttgcttggttgatcggttgggccttgttactggaatatacgattggtagcgctgctgttgctcgtggcataacccc |
244 |
Q |
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|||||||||||||| |||||| |||| || |||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
9657922 |
gttgcttggttgataggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccc |
9657846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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