View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8713_high_2 (Length: 437)
Name: NF8713_high_2
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 12104543 - 12104962
Alignment:
| Q |
1 |
tccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgtttactcggttttggtctcgctagaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104543 |
tccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgtttactcggttttggtctcgctagaagct |
12104642 |
T |
|
| Q |
101 |
gcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaacacaggatgcattattgggaaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12104643 |
gcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaacacaggatgcattattggcaaagaa |
12104742 |
T |
|
| Q |
201 |
tgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgggtaaggagtttaatattactctcgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104743 |
tgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagcttagttttctcaatatgggtaaggagtttaatattactctcgt |
12104842 |
T |
|
| Q |
301 |
aacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttacagataattgtctaaatcttgaagat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12104843 |
aacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttacagataattgtccaaatcttgaagat |
12104942 |
T |
|
| Q |
401 |
cttctactatttgatataac |
420 |
Q |
| |
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|||||||||||||||||||| |
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| T |
12104943 |
cttctactatttgatataac |
12104962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 12094202 - 12094470
Alignment:
| Q |
1 |
tccagatgtggaattggaattcgttgatgccaaagcggaagaagccaaacactccttatttgacgaattcgtttactcggttttggtctcgctagaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||| |||| | |
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| T |
12094202 |
tccagatgtggaattggaattcgtcgatgacaaagcggaagaagccaaaaactccttattcgacaaattcgtttactcagttttggtctcgc--gaagtt |
12094299 |
T |
|
| Q |
101 |
gcgggtaaagaagaaaacaaggcaaatacacgttgttcccaattatgcatccacagtttcatcctgcatgttgaacacaggatgcattattgggaaagaa |
200 |
Q |
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||||||||| || |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12094300 |
gcgggtaaacaacaaaagaaggcaaatacacgtttttcccaattatgtatccacagtttcatcctgcatgttgaacacaggatgcattattgggaaagaa |
12094399 |
T |
|
| Q |
201 |
tgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaat |
271 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
12094400 |
tgatccctcatctgccttattctatccttacttgtgcaaccctcgttgttcttaagctcggttttctcaat |
12094470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 1446488 - 1446370
Alignment:
| Q |
222 |
ctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgggtaagg-agtttaatattactctcgtaacattaccctcactcaaaa |
320 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||||||| ||| |||||||| || | ||| ||||| || | ||| |||||| |||||||||| |
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| T |
1446488 |
ctattcttacttgtacaacccttgttgttcttaagctcagttatctttatatgggtccggcattttgttatta-tcccataatattaccttcactcaaaa |
1446390 |
T |
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| Q |
321 |
ccctacatttgaaatacatt |
340 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
1446389 |
ccctacatttgaaagacatt |
1446370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 1459818 - 1459773
Alignment:
| Q |
295 |
tctcgtaacattaccctcactcaaaaccctacatttgaaatacatt |
340 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
1459818 |
tctcataagattaccctcactcaaaaccctacatctgaaagacatt |
1459773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 45810998 - 45810966
Alignment:
| Q |
302 |
acattaccctcactcaaaaccctacatttgaaa |
334 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
45810998 |
acattaccttcactcaaaaccctacatttgaaa |
45810966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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