View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8713_high_3 (Length: 343)
Name: NF8713_high_3
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 56471752 - 56472073
Alignment:
| Q |
1 |
tcctacatgaaggttaaattaattaatgaatgaaaaattgaaacaaaagcgatgatatgtcattatcaatacatactcgtagtcaagactttcaatttga |
100 |
Q |
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| T |
56471752 |
tcctacatgaaggttaaattaattaatgaatgaaaaattgaaacaaaagcgatgatatgtcattatcaatacatactcgtagtcaagactttcaatttga |
56471851 |
T |
|
| Q |
101 |
caaacattggctccaacaatggcaacctgggaggtagtattgagcctgttgttattcttcacaaggagaggctctctcaacgtcaacccaccaccagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
56471852 |
caaacattggctccaacaatggcaacctgggaggtagtattgagcctgttgttattcttcacaaggagaggctctctcaacgtcaac---ccgccagatg |
56471948 |
T |
|
| Q |
201 |
aagatcttgatgatattattattctatcttcctccttacccatatgctccacgtcccttccatcgtcttccatttccatatttcgcctcctatcttatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56471949 |
aagatcttgatgatattattattctatcttcctccttacccatatgctccacgtcccttccatcgtcttccatttccatatttcgcctcctatcttatca |
56472048 |
T |
|
| Q |
301 |
caataataattattaccaatcatct |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
56472049 |
caataataattattaccaatcatct |
56472073 |
T |
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