View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8713_low_3 (Length: 388)
Name: NF8713_low_3
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_low_3 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 12319677 - 12319310
Alignment:
| Q |
13 |
tggacatcaattataagaattttaatgatgcctttacatttagtttctttctcttgtaaaataatgttaacgagttgtgctttgtatgactctgcataaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12319677 |
tggacatcaattataagaattttaatgatgcctttacatttagtttctttctcttgtaaaataatgttaacgagttgtgctttgtatgactctgcataaa |
12319578 |
T |
|
| Q |
113 |
ttatacttggtaacaatgattggtatgtctaatgtaaataatcatagttcagttgtgcagtttgaaagttccttgaagaacaaaactagataggaagaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12319577 |
ttatacttggtaacaatgattggtatgtctaatgtaaataatcatagttcagttgtgcagtttgaaagttccttgaagaacaaaactagataggaagaga |
12319478 |
T |
|
| Q |
213 |
tgtggttgcttgtcttagtgaggctatggaaagtcaaggactagatatgtgagtttctgttattgcattttaagttgttattgatttatagtatgtatgt |
312 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
12319477 |
tgtggtttcttgtcttagtgaggctatggaaagtcaaggactagatatgtgagtttctgttattgcattttaagttgttattgatttgtagtatgtgtgt |
12319378 |
T |
|
| Q |
313 |
ttcttgttgatttttctttgaacgtgtaaaactagtacac----tatactttttgtgatgactctcta |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12319377 |
ttcttgttgatttttctttgaacgtgtaaaactagtacactatatatactttttgtgatgactctcta |
12319310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 9241 - 9197
Alignment:
| Q |
301 |
tagtatgtatgtttcttgtt-gatttttctttgaacgtgtaaaac |
344 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9241 |
tagtatttatgtttcttgtttgatttttctttgaacgtgtaaaac |
9197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 8015849 - 8015783
Alignment:
| Q |
205 |
ggaagaaatgtggttgcttgtcttagtgaggctatggaaagtcaaggactagatatgtgagtttctg |
271 |
Q |
| |
|
|||||| |||| ||||||||| | | |||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
8015849 |
ggaagagatgtagttgcttgtttgaacgaggctttggaaagacaaggactagatatgcgagtttctg |
8015783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University