View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8713_low_6 (Length: 248)
Name: NF8713_low_6
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2397079 - 2396868
Alignment:
| Q |
18 |
catcagtcttaagagtcaaattttctagcatttacgtacacactttataactttaagtagaatacgaaaactccatnnnnnnnngtagaatacgaaatta |
117 |
Q |
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| T |
2397079 |
catcggtcttaagagtcaaattttctagcatttacgtacacactttataactttaagtagaatacggtaactccataaaaaaaagtagaatacgaaatta |
2396980 |
T |
|
| Q |
118 |
aaacatataattgggtgttgatccgttggattat---ggtactccaattatatattctggtcctataaaaagtgacatgtttttagtcaattttgacaat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2396979 |
aaacatataattgg-tgttgatccgttggattattatggtactccaattatatattttggtcctataaaaagtgacatgtttttagtcaattttgacaat |
2396881 |
T |
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| Q |
215 |
agcgtataattgg |
227 |
Q |
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||| ||||||||| |
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| T |
2396880 |
agcctataattgg |
2396868 |
T |
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