View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8713_low_7 (Length: 210)
Name: NF8713_low_7
Description: NF8713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8713_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 13141672 - 13141497
Alignment:
| Q |
16 |
ataattctatacaaatattcatacatgaataattaaattttcttttacttagttaaaatcatttattcttctaaaagtgcaatttacataaaaaagagaa |
115 |
Q |
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| T |
13141672 |
ataattctatacaaatattcatacatgaataattaaattttcttttacttagttaaaatcatttattcttctaaaagtgcaatttacataaaaaagagaa |
13141573 |
T |
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| Q |
116 |
aaataggccataccagtttcgaaacattcttccagaaatgaggactaggttttgcagtaaaataagctgtgctcaa |
191 |
Q |
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| T |
13141572 |
aaataggccataccagtttcgaaacattcttccagaaatgaggactaggttttgcagtaaaataagctgtgctcaa |
13141497 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 29013384 - 29013442
Alignment:
| Q |
124 |
cataccagtttcgaaacattcttccagaaatgaggactaggttttgcagtaaaataagc |
182 |
Q |
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| T |
29013384 |
cataccagttttgaaacgttcttccagaaatgtggactaggctttgcagtaaaataagc |
29013442 |
T |
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