View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8715_high_1 (Length: 392)
Name: NF8715_high_1
Description: NF8715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8715_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 177 - 375
Target Start/End: Complemental strand, 5190009 - 5189811
Alignment:
| Q |
177 |
gaattgaagaagattataaagattagagagagaatgccctaaaaaactaggagctttgtggagacttattggtggagcaattatcactgcataatcattt |
276 |
Q |
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| T |
5190009 |
gaattgaagaagattataaagattagagagagaatgccctaaaaaactaggagctttgtggagacttattggtggagcaattatcactgcataatcattt |
5189910 |
T |
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| Q |
277 |
gtttattaggggaacgtccggttgagtaccgcatcttatggaagcttatgactaattatttaatttaaagtacatgtcatttgaaagcaatcttaaggt |
375 |
Q |
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| T |
5189909 |
gtttattaggggaacgtccggttgagtaccgcatcttatggaagcttatgactaattatttaatttaaagtacatgtcatttgaaagcaaccttaaggt |
5189811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5190210 - 5190034
Alignment:
| Q |
1 |
tctttccatgttagagggaattgaatcaacaatgttttattcactctcacagtcacataagcttgtaaatccactgtcaatttcgagctatagttaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5190210 |
tctttccatgttagagggaattgaatcaacaatgttttattcactctcacagtcacataagcttgtaaatccactgtcaatttctagctatagttaatct |
5190111 |
T |
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| Q |
101 |
tgacccttaatcactcttaaaaggtgtcggtgatatgatatttataaactggttacctaattaagcatagaaagagg |
177 |
Q |
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| T |
5190110 |
tgacccttaatcactcttaaaaggtgtcggtgatatgatatttataaagtggctacctaattaagcatagaaagagg |
5190034 |
T |
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