View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8715_low_3 (Length: 325)
Name: NF8715_low_3
Description: NF8715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8715_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 2657379 - 2657263
Alignment:
| Q |
190 |
gtctttgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatcttgtttacatac |
289 |
Q |
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| T |
2657379 |
gtctttgtttctcgtctcaatcctcc-aaccaataggatcaacgctcttgtttgcagatatcatggaaatttt-atagttttatgatcttgtttacatac |
2657282 |
T |
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| Q |
290 |
ctaccaagttaaggacgtt |
308 |
Q |
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| T |
2657281 |
ctaccaagttaaggacgtt |
2657263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 2657572 - 2657411
Alignment:
| Q |
4 |
gagcagaacctgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaaggaagaacaagaaatgtttg |
103 |
Q |
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| T |
2657572 |
gagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctatta----------------------aacaggaaatgtttg |
2657495 |
T |
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| Q |
104 |
ttatgattaagattacacaaaagtacgtggatgagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt |
191 |
Q |
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| T |
2657494 |
ttatgattaagattacacaaaagt----ggatgagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt |
2657411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 13163468 - 13163550
Alignment:
| Q |
195 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatct |
278 |
Q |
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| T |
13163468 |
tgtttcccgtctcaatcctttgagccattaggatcatcactcttgtttgcagatatcatgtgaa-ttttaaagttttatgatct |
13163550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 16375422 - 16375587
Alignment:
| Q |
14 |
tgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaaggaagaacaagaaatgtttgttatgattaa |
113 |
Q |
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| T |
16375422 |
tgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactatacaaagggggatcaagaagtg-ttgttatgattaa |
16375520 |
T |
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| Q |
114 |
gattacacaaaagtacgtggatgagttg---aatgttgaacattataatcttgttacgaataaatatgat |
180 |
Q |
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| T |
16375521 |
gattacacaaaag---gtggatgagttgctacttgttgaacattataatcttattatgaataaatatgat |
16375587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 8332144 - 8332204
Alignment:
| Q |
195 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
255 |
Q |
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| T |
8332144 |
tgtttttcgtctcaatcctctcaaccactaagatcaacactcttgtttgcagatatcatgg |
8332204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 3704846 - 3704786
Alignment:
| Q |
195 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
255 |
Q |
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| T |
3704846 |
tgtttcttgtctcaatccttcgaaccactaggatcaatgctcttgtttgcggatatcatgg |
3704786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 47569363 - 47569427
Alignment:
| Q |
16 |
tgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatac |
80 |
Q |
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| T |
47569363 |
tgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggtagactatac |
47569427 |
T |
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