View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8715_low_5 (Length: 257)

Name: NF8715_low_5
Description: NF8715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8715_low_5
NF8715_low_5
[»] chr8 (7 HSPs)
chr8 (1-249)||(7023279-7023527)
chr8 (8-249)||(7075344-7075585)
chr8 (6-249)||(7036377-7036620)
chr8 (6-249)||(7030668-7030911)
chr8 (15-124)||(7081406-7081515)
chr8 (9-112)||(7068845-7068948)
chr8 (9-112)||(7092786-7092889)
[»] chr4 (7 HSPs)
chr4 (81-117)||(3817514-3817550)
chr4 (81-117)||(3919914-3919950)
chr4 (81-117)||(3933138-3933174)
chr4 (84-117)||(3954577-3954610)
chr4 (84-117)||(4002220-4002253)
chr4 (81-117)||(3809934-3809970)
chr4 (84-112)||(4009917-4009945)
[»] chr5 (1 HSPs)
chr5 (84-112)||(13397871-13397899)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 7023527 - 7023279
Alignment:
Q  1 ctcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023527 ctcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaat 7023428  T
Q  101 aagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7023427 aagaaccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatctttcgtattttcttcctctaacagagtggataaaagc 7023328  T
Q  201 ttttttcttaatgacaaattgtttgtgccagatctttctgattcttctc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7023327 ttttttcttaatgacaaattgtttgtgccagatctttctgattcttctc 7023279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 7075344 - 7075585
Alignment:
Q  8 agttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc 107  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  7075344 agttatgatgattctacttcctggtcctaaccaatcaactgttccaaccaaaacttctagttgttccgcatctttgacatcatcaagaacaataagaacc 7075443  T
Q  108 ttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttttc 207  Q
    |||||||||| ||||||||| ||||  |||||| ||||| |||||||||  ||||||||   || ||| |||||||| ||||||||||||||||||||||    
T  7075444 ttcatgcggctaagccttttcttaaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctctaatagagtggataaaagcttttttc 7075543  T
Q  208 ttaatgacaaattgtttgtgccagatctttctgattcttctc 249  Q
    ||||   |||| ||||||||||| ||||||||||||||||||    
T  7075544 ttaacctcaaactgtttgtgccatatctttctgattcttctc 7075585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 7036620 - 7036377
Alignment:
Q  6 gtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaa 105  Q
    |||||||| ||||||| |||||||||||| |||||||||| | |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  7036620 gtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaa 7036521  T
Q  106 ccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttt 205  Q
    ||||||||||||  |||||||| ||||  |||||  ||||| |||||||||  ||||||||   || |||||||||||| |||||||||||||| |||||    
T  7036520 ccttcatgcggcttagccttttcttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttt 7036421  T
Q  206 tcttaatgacaaattgtttgtgccagatctttctgattcttctc 249  Q
    |||||    |||| ||||||| | | ||| ||||||||||||||    
T  7036420 tcttagcctcaaactgtttgttctacatccttctgattcttctc 7036377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 7030911 - 7030668
Alignment:
Q  6 gtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaa 105  Q
    |||||||| ||||||| ||||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  7030911 gtagttatgatgattctacttcttggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaa 7030812  T
Q  106 ccttcatgcggcgaagccttttattaaataaaggttgtaattcatttatcagatcatcttttgtattttcttcctctaacagagtggataaaagcttttt 205  Q
    ||||||| ||| |||||||||| ||||  |||||  ||||  |||||||||| ||||||||   ||||||||||| ||| || ||||||||||   ||||    
T  7030811 ccttcatacggtgaagccttttcttaaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaataatttt 7030712  T
Q  206 tcttaatgacaaattgtttgtgccagatctttctgattcttctc 249  Q
    ||||||   |||| ||||||| ||| ||||||||||||||||||    
T  7030711 tcttaacctcaaactgtttgttccacatctttctgattcttctc 7030668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 7081406 - 7081515
Alignment:
Q  15 atgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaaccttcatgc 114  Q
    ||||||| ||| |||| |||||||||||||||||||||||  |||| ||||||||| | || ||| |||||||| |||||||||| |||||||||||| |    
T  7081406 atgattctactacctgttccaaaccaatcaagtgttccaattaaaatttctaattgttgtggatccttgacatcgtcaagaacaacaagaaccttcatac 7081505  T
Q  115 ggcgaagcct 124  Q
    | ||||||||    
T  7081506 gacgaagcct 7081515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 7068845 - 7068948
Alignment:
Q  9 gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacct 108  Q
    ||||| ||||||| ||| |||  |||||||||||||||||||||||  ||||  |||| |||||||  |||  | ||||| |||||||||| ||||||||    
T  7068845 gttatgatgattctactaccttttccaaaccaatcaagtgttccaattaaaatatctagttgctcttgatcactcacatcgtcaagaacaacaagaacct 7068944  T
Q  109 tcat 112  Q
    ||||    
T  7068945 tcat 7068948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 7092786 - 7092889
Alignment:
Q  9 gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacct 108  Q
    ||||| ||||||| |||  ||| ||| |||||||||||||||||||  |||  ||||| |||   || ||| |||||||| |||||||||||||||||||    
T  7092786 gttataatgattctactatctgttcctaaccaatcaagtgttccaattaaagtttctacttgtcgtgaatcattgacatcgtcaagaacaataagaacct 7092885  T
Q  109 tcat 112  Q
    ||||    
T  7092886 tcat 7092889  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 3817514 - 3817550
Alignment:
Q  81 ttgacatcatcaagaacaataagaaccttcatgcggc 117  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3817514 ttgacatcatcaagaacgataagaaccttcatgcggc 3817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 3919950 - 3919914
Alignment:
Q  81 ttgacatcatcaagaacaataagaaccttcatgcggc 117  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3919950 ttgacatcatcaagaacgataagaaccttcatgcggc 3919914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 3933174 - 3933138
Alignment:
Q  81 ttgacatcatcaagaacaataagaaccttcatgcggc 117  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3933174 ttgacatcatcaagaacaataagaactttcatgcggc 3933138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 3954610 - 3954577
Alignment:
Q  84 acatcatcaagaacaataagaaccttcatgcggc 117  Q
    ||||||||||||||||||||||||||||| ||||    
T  3954610 acatcatcaagaacaataagaaccttcatacggc 3954577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 4002220 - 4002253
Alignment:
Q  84 acatcatcaagaacaataagaaccttcatgcggc 117  Q
    ||||||||||||||||||||||||||||| ||||    
T  4002220 acatcatcaagaacaataagaaccttcatacggc 4002253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 3809934 - 3809970
Alignment:
Q  81 ttgacatcatcaagaacaataagaaccttcatgcggc 117  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  3809934 ttgacgtcatcaagaacgataagaaccttcatgcggc 3809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 4009917 - 4009945
Alignment:
Q  84 acatcatcaagaacaataagaaccttcat 112  Q
    |||||||||||||||||||||||||||||    
T  4009917 acatcatcaagaacaataagaaccttcat 4009945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 13397871 - 13397899
Alignment:
Q  84 acatcatcaagaacaataagaaccttcat 112  Q
    |||||||||||||||||||||||||||||    
T  13397871 acatcatcaagaacaataagaaccttcat 13397899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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