View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8715_low_7 (Length: 240)
Name: NF8715_low_7
Description: NF8715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8715_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33792997 - 33793208
Alignment:
| Q |
1 |
tatatttcattatttactattgatttcaccacacgtacatctattttcgataaatactcactcttctcatttatttattcgaccatgagctcatcttatt |
100 |
Q |
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| T |
33792997 |
tatatttcattatttactattgattttaccacacgtacatctatttgcgttaaatactcactcttctcatttatttattcgaccatgagctcatcttatt |
33793096 |
T |
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| Q |
101 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcacttatgagggacgtgaatcacgtgattgt |
200 |
Q |
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| T |
33793097 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcacttattaggg---------acgtgattgt |
33793187 |
T |
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| Q |
201 |
catggatgtagctatacaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33793188 |
catggatgtagctatacaaat |
33793208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8312000 - 8311924
Alignment:
| Q |
101 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcacttatg |
177 |
Q |
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| T |
8312000 |
ttgctgggtcaaaagtattatgcctattatcatgggttacttgctaaatacaaggagcagttttccactcacttatg |
8311924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 26251004 - 26251078
Alignment:
| Q |
101 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcactta |
175 |
Q |
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| T |
26251004 |
ttgctaggtcaaaggtgttatgcctacttttatgagttacttgctaaatataaggagcagttttccactcactta |
26251078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 27977800 - 27977714
Alignment:
| Q |
101 |
ttgctgggtcaaatgtgttatgcctgttatt-atgggttacatgctaaatatatggagcag-ttttccactcacttatgagggacgt |
185 |
Q |
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| T |
27977800 |
ttgctgggtcaaaggtgttatgcctatttttcatgggttacttgctaaatataaggagcagtttttccactaacttaagggggacgt |
27977714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 28064328 - 28064242
Alignment:
| Q |
101 |
ttgctgggtcaaatgtgttatgcctgttatt-atgggttacatgctaaatatatggagcag-ttttccactcacttatgagggacgt |
185 |
Q |
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||||||||||||| ||||||||||| || || ||||||||| ||||||||||| ||||||| ||||||||| ||||| | ||||||| |
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| T |
28064328 |
ttgctgggtcaaaggtgttatgcctatttttcatgggttacttgctaaatataaggagcagtttttccactaacttaagggggacgt |
28064242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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