View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_high_11 (Length: 217)
Name: NF8717_high_11
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 39476020 - 39475839
Alignment:
| Q |
20 |
aactgggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacg |
119 |
Q |
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| T |
39476020 |
aactgggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacg |
39475921 |
T |
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| Q |
120 |
aagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattg |
201 |
Q |
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| T |
39475920 |
aagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattg |
39475839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 39483766 - 39483590
Alignment:
| Q |
25 |
ggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagag |
124 |
Q |
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| T |
39483766 |
ggcaatggatttgaaggaatggggttggcaaaactcgggatggctgcctctttctcttgcagcagctgagtcaaatcgatattgtctcgttcacgaagag |
39483667 |
T |
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| Q |
125 |
tgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattg |
201 |
Q |
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| T |
39483666 |
tgtgaagataaagattcaaaccaagggaagcaacactgaaagtgtagaaaacgagcgtagggacattgaactcattg |
39483590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 39451482 - 39451349
Alignment:
| Q |
52 |
gcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaaggg |
151 |
Q |
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|||||| |||||||||||| ||| |||||| || ||| |||||| ||||| || |||||||||||||| || || | || | ||||||||||||||||| |
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| T |
39451482 |
gcgaaagtcgggatggctaactctttctgctgctgcaactgagttgaatcaacgttgtctcgttcacggagggtatgaatatgaagattcaaaccaaggg |
39451383 |
T |
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| Q |
152 |
aagcaacaccagaagtgaagaaaacgagcgtagg |
185 |
Q |
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| T |
39451382 |
aagcaacgccagaagtgaagaagacgagcatagg |
39451349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 39486951 - 39486812
Alignment:
| Q |
48 |
gttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaacca |
147 |
Q |
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| T |
39486951 |
gttggcaaaacttgggatggctacctcgttctgctgcagcaactgagttgaatcgatgttgtctcgttcaaacagagtgtgaagatggagcatcaaacca |
39486852 |
T |
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| Q |
148 |
agggaagcaacaccagaagtgaagaaaacgagcgtaggga |
187 |
Q |
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| T |
39486851 |
agaaaagcaacaccggaagtgaagaagatgagcgcaggga |
39486812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 39472467 - 39472375
Alignment:
| Q |
97 |
gaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggaca |
189 |
Q |
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|||| |||||||||||||| ||||||||||||||| | || | |||| |||||| | |||||||| ||||||||||| || |||||||||||| |
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| T |
39472467 |
gaatagacattgtctcgttgacgaagagtgtaaagatgaaaactcaatccaaggaacgcaacaccggaagtgaagaagacaagcgtagggaca |
39472375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 39457953 - 39458124
Alignment:
| Q |
19 |
gaactgggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcac |
118 |
Q |
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||||||||||| | ||||||||||| | ||| ||||||| ||||||| | ||| ||||| |||||| |||||| ||||| || |||||||||||| |
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| T |
39457953 |
gaactgggcaaagtgtttgaaggaactgagttagcgaaacctcggatggccaactcagtctgctgcagcaactgagtggaatcaacgttgtctcgttcaa |
39458052 |
T |
|
| Q |
119 |
gaagagtgtaaaggtaaagatt-caaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggaca |
189 |
Q |
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| | | | || | |||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||| |
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| T |
39458053 |
acatattatgaatatgaagatttcaaaccaaggaaagcaacaccggaagtgaagaagacgagcgtagggaca |
39458124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 39460684 - 39460593
Alignment:
| Q |
97 |
gaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggac |
188 |
Q |
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| T |
39460684 |
gaatctacgttgtctctttcacgaagagtgtggatatgaagatttgaaccaagggaagcaacaccggaagtgaagaagacaagcgtagggac |
39460593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 39464217 - 39464369
Alignment:
| Q |
21 |
actgggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacga |
120 |
Q |
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||||||||| ||||||| |||||||| ||| ||||||||||||| || | || || | || ||||||||| |||||||| |||||||||||| |
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| T |
39464217 |
actgggcaacgattttgtaggaacggagttagcgaaactcgggagggacaattcagtcagttgctccagctgagttgaatcgacgttgtctcgttcaaac |
39464316 |
T |
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| Q |
121 |
agagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaa |
173 |
Q |
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| ||||| || | |||||||||||||||| ||||||||| ||||||||||| |
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| T |
39464317 |
aaagtgtgaatatgaagattcaaaccaaggaaagcaacactcgaagtgaagaa |
39464369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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