View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_high_3 (Length: 351)
Name: NF8717_high_3
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1422341 - 1422679
Alignment:
| Q |
1 |
agaaccaagttgtgattaacaacacaccaaatgttatatcacgcattaacaataaatcgttctnnnnnnnntccataatgtaaaccctacaacagtagca |
100 |
Q |
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| T |
1422341 |
agaaccaagttgt-attaacaacacaccaaatattatatcacgcattgacaataaatcgttctaaaaaaaatccataatgtaaaccctacaacagtagca |
1422439 |
T |
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| Q |
101 |
aggacgtgcttcaagtaaaatatggtttataaggtannnnnnnn-------cctttccctccacttttattcccctctaaagaatggaatcaaacaatta |
193 |
Q |
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| T |
1422440 |
aggatgtgcttcaagtaaaatatggtttataaggtttttttttttttttttcctttccctccacttttattcccctctaaagaatggaatcaaacaatta |
1422539 |
T |
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| Q |
194 |
aatttaagaaatcaatagttgttgaaataagaaaaatattattgatgcacgccaa----aaccaagcaacggtagatggcgaagcaacaaaaaccatcct |
289 |
Q |
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| T |
1422540 |
aatttaagaaaacaatagttgttgaaataagaaaaatattattgatgcacgccaaaatcaagcaagcaacggtagatggcgaagcaacaaaaaccatcct |
1422639 |
T |
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| Q |
290 |
catcacatatttaaaagatacaatgaagaccttacaccat |
329 |
Q |
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| T |
1422640 |
catcacatctttaaaagatacaatgaagaccttacaccat |
1422679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1415968 - 1416031
Alignment:
| Q |
1 |
agaaccaagttgtgattaacaacacaccaaatgttat---atcacgcattaacaataaatcgtt |
61 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
1415968 |
agaaccaagttgtgattaacaacacaacaaatgttatatcatcatgcattaacaataaatcgtt |
1416031 |
T |
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