View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_high_6 (Length: 303)
Name: NF8717_high_6
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 16686612 - 16686887
Alignment:
| Q |
19 |
tcttgacctttcccataaaccaacctttggcattgcataattaagttacaccaaatatcccacagaaccaaaaatcatgattagtaaatgtttcaaagtc |
118 |
Q |
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| T |
16686612 |
tcttgacctttcccataaaccaacctttggcattgcataattaagttataccaaatatcccacagaaccaaaaatcatgattagtaaatgtttcaaaatc |
16686711 |
T |
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| Q |
119 |
tttttgttggtttcaataatttcgttgatcattgtttccattgtcattatattagttttcacaacctttgaagccaagaacccagttgtacatctctatc |
218 |
Q |
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| T |
16686712 |
tttttgttggtttcaataatttcgttgatcattgtttccattgtcattatattagttttcacaacctttgaagccaagaacccagttgtacatctctatc |
16686811 |
T |
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| Q |
219 |
cagttgacctagataaggttgaatttttcacacccggtgtaacaattgtaaatttaaccatgataatcagtataat |
294 |
Q |
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| T |
16686812 |
cagttgacctagataaggttgaatttttcacacccggtgtaacaattgtaaatttaaccatgataatcagtgtaat |
16686887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 16619543 - 16619641
Alignment:
| Q |
121 |
tttgttggtttcaataatttcgttgatcattgtttccattgtcattata---ttagttttcacaacctttgaagccaagaacccagttgtacatctcta |
216 |
Q |
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| T |
16619543 |
tttgttagtgtcaataattttcttgatcattgttgccaccgtgattttatccttagttttcacaatctttaaacccaagaacccagatgtacatgtcta |
16619641 |
T |
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