View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_low_1 (Length: 657)
Name: NF8717_low_1
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_low_1 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 41248731 - 41249121
Alignment:
| Q |
13 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaatcaaaaagacgatccttctattaagtttg |
112 |
Q |
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| T |
41248731 |
attatacttttaaatcggtcacgccatcgtcaagatggaacaacattacaaggctgttgtctcccgtcaaattaaaaacacgatcctt-----aagtttg |
41248825 |
T |
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| Q |
113 |
agatggtaaatggtagccatgaattagagaaaaatacagaagcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
212 |
Q |
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| T |
41248826 |
agatggtaaatggtagccatgaattagagaaaaatacagtcgcaagtgagaaaaatgccaccgaatataagtttgttgtagttacacctaaatcacaaat |
41248925 |
T |
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| Q |
213 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacacccaaattaagagtggggacttaaatttgtttcgcataggctacaa |
312 |
Q |
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| T |
41248926 |
gtacaaattgagaaaaatatagaaaactccttttgaaagttgagcactacaacacccaaattaagagtggggacttaaatttgtttcgcataggctacaa |
41249025 |
T |
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| Q |
313 |
tttggccccccttttccaacactgctatatatctcgaggaaaagcttctcgaagtgatcagtcacgaaacacaattcaaccaatcaaagttgctcc |
408 |
Q |
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| T |
41249026 |
tttggccccccttttccagcactgctatatatctcgaggaaaagcttctcgaagtgatcagtcacgaaacacaattcaaccaatcaaagttgctcc |
41249121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 493 - 640
Target Start/End: Original strand, 41249298 - 41249440
Alignment:
| Q |
493 |
atcacacaaatgaattgaacacaacatctttatccaaaacctaagacataagttaaaatgctcaacatccactattgtatccaacgtgaaactcttactc |
592 |
Q |
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| T |
41249298 |
atcacacaagtgagttgaacacaacaactttatccaaaacctaacacataagttaaaatgctcaacatccacttttgtatccaatgtgaaactcttactc |
41249397 |
T |
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| Q |
593 |
agaaatgaaatgatacaggaacacaaacaaacttgttattgttagacc |
640 |
Q |
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| T |
41249398 |
a-----gaaatgatacaggaacacaaacaaacttgttattgttagacc |
41249440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 41249145 - 41249203
Alignment:
| Q |
433 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctgccaactcgtttaagc |
491 |
Q |
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| T |
41249145 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctgccaactcgtttaagc |
41249203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 481
Target Start/End: Complemental strand, 90019 - 89979
Alignment:
| Q |
441 |
atcaaataaatgtaaaatctaagggatgttatgctgccaac |
481 |
Q |
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| T |
90019 |
atcaaataaatgtaaaatctaaggtatgttatgctaccaac |
89979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 34482516 - 34482473
Alignment:
| Q |
433 |
agcagttcatcaaataaatgtaaaatctaagggatgttatgctg |
476 |
Q |
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| T |
34482516 |
agcagtccatcaaataaatgtgaaatctaaaggatgttatgctg |
34482473 |
T |
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