View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_low_10 (Length: 221)
Name: NF8717_low_10
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 10408495 - 10408410
Alignment:
| Q |
12 |
agattatactagagaatgaggagtttctatagatatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
10408495 |
agattttaatagagaatgaggagtttctatagatatgccacatagacacaatccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 10408367 - 10408317
Alignment:
| Q |
158 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaag |
208 |
Q |
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| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaag |
10408317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 10391625 - 10391575
Alignment:
| Q |
158 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaag |
208 |
Q |
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| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaag |
10391575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 10403134 - 10403084
Alignment:
| Q |
158 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaag |
208 |
Q |
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| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaag |
10403084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
53 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
44 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
44 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
50 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
47 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
97 |
Q |
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| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
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