View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8717_low_4 (Length: 330)

Name: NF8717_low_4
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8717_low_4
NF8717_low_4
[»] chr4 (3 HSPs)
chr4 (83-321)||(16080386-16080624)
chr4 (264-321)||(51166200-51166257)
chr4 (16-60)||(16080318-16080362)
[»] chr3 (3 HSPs)
chr3 (86-321)||(48772491-48772726)
chr3 (17-60)||(48772421-48772464)
chr3 (17-49)||(110867-110899)
[»] chr8 (3 HSPs)
chr8 (83-321)||(64024-64263)
chr8 (18-59)||(63960-64001)
chr8 (17-53)||(22638996-22639032)
[»] chr6 (3 HSPs)
chr6 (83-252)||(19329158-19329327)
chr6 (17-58)||(19329092-19329133)
chr6 (17-49)||(20646967-20646999)
[»] chr1 (2 HSPs)
chr1 (85-296)||(44885803-44886014)
chr1 (17-53)||(44886047-44886083)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 16080386 - 16080624
Alignment:
Q  83 tggtagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaaga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16080386 tggtagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaaga 16080485  T
Q  183 gaccataatcatgaactattttccccaaacaattcacagtttcttagagtacatagaagcaaaaccaaagtgcnnnnnnnncttattgatgtgcttgatg 282  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  16080486 gaccataatcatgaactattttccccaaacagttcacactttcttagagtacatagaagcaaaaccaaagtgcaaaaaaaacttattgatgtgcttgatg 16080585  T
Q  283 attctggtataggccctagtaaaatagcatcagtattat 321  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  16080586 attctggtataggccctagtaaaatagcatcagtgttat 16080624  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 51166200 - 51166257
Alignment:
Q  264 cttattgatgtgcttgatgattctggtataggccctagtaaaatagcatcagtattat 321  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  51166200 cttattgatgtgcttcatgattctggtataggccctagtaaaatagcatcagtgttat 51166257  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 16080318 - 16080362
Alignment:
Q  16 aaattggtcaagagattctttgttcaaaggaggggtttagatccc 60  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  16080318 aaattggtcaagagattctttgttctaaggaggggtttggatccc 16080362  T

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Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 86 - 321
Target Start/End: Original strand, 48772491 - 48772726
Alignment:
Q  86 tagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaagagac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  48772491 tagtcttattgtacatgatcaaacaagggtaggatgcaaggcaccgttgtatatcaagaaaagtgaagataggtggattgtttttagatttgttagagac 48772590  T
Q  186 cataatcatgaactattttccccaaacaattcacagtttcttagagtacatagaagcaaaaccaaagtgcnnnnnnnncttattgatgtgcttgatgatt 285  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  48772591 cataatcatgaactattttccctaaacagttcacagtttcttagagtacatagaagcaaaaccaaagtgcaaaaaaaacttattgatgtgcttgatgatt 48772690  T
Q  286 ctggtataggccctagtaaaatagcatcagtattat 321  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48772691 ctggtataggccctagtaaaatagcatcagtgttat 48772726  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 48772421 - 48772464
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggggtttagatccc 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  48772421 aattggtcaagagattctttgtttaaaggaggggtttagatccc 48772464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 110867 - 110899
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  110867 aattggtcaagagattgtttgttcaaaggaggg 110899  T

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Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 64024 - 64263
Alignment:
Q  83 tggtagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaaga 182  Q
    |||||||||||  ||||| |||||||||||||||||||||||| || | ||||| |||||||||| ||||||| |||||| |||||||||||||||||||    
T  64024 tggtagtcttaaagtacacgatcaaacaagggtaggatgcaagtcaatattgtacatcaagaaaaatgaagatgggtggattgtttctagatttgtaaga 64123  T
Q  183 gaccataatcatgaactattttccccaaacaattcacagtttcttagagtacatagaagcaaaaccaaagtgc-nnnnnnnncttattgatgtgcttgat 281  Q
    ||||||||||||| ||||||||||| ||  | ||||||   |||| ||||||||||||  ||||||  |||||         ||||||||||||||| ||    
T  64124 gaccataatcatgtactattttcccgaagaagttcacaacatcttcgagtacatagaaagaaaaccccagtgcaaaaaaaaacttattgatgtgcttcat 64223  T
Q  282 gattctggtataggccctagtaaaatagcatcagtattat 321  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  64224 gattctggtataggccctagtaaaatagcatcagtgttat 64263  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 63960 - 64001
Alignment:
Q  18 attggtcaagagattctttgttcaaaggaggggtttagatcc 59  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  63960 attggtcaagaaattctttgttcaaaggagggttttagatcc 64001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 22638996 - 22639032
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggggttt 53  Q
    ||||||||| |||||||||||||||||||||||||||    
T  22638996 aattggtcaggagattctttgttcaaaggaggggttt 22639032  T

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Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 19329158 - 19329327
Alignment:
Q  83 tggtagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaaga 182  Q
    ||||| |||||  ||||| |||||||||||||||||||||||  || ||||||| |||||||||| |||||||||||||||| |||||||||||| ||||    
T  19329158 tggtattcttaaagtacacgatcaaacaagggtaggatgcaaaacaatgttgtacatcaagaaaaatgaagataggtggactatttctagatttgaaaga 19329257  T
Q  183 gaccataatcatgaactattttccccaaacaattcacagtttcttagagtacatagaagcaaaaccaaag 252  Q
    ||| | ||||||||||||||||||||||  | |||||| |||||| |||| |||||||||||||||||||    
T  19329258 gacaacaatcatgaactattttccccaataatttcacattttcttcgagtgcatagaagcaaaaccaaag 19329327  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 19329092 - 19329133
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggggtttagatc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19329092 aattggtcaagagattctttgttcaaaggaggggtttagatc 19329133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 20646999 - 20646967
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  20646999 aattggtcaagagattgtttgttcaaaggaggg 20646967  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 296
Target Start/End: Complemental strand, 44886014 - 44885803
Alignment:
Q  85 gtagtcttattgtacatgatcaaacaagggtaggatgcaaggcactgttgtatatcaagaaaagtgaagataggtggactgtttctagatttgtaagaga 184  Q
    ||||||| |||  ||||||| |||| ||||| ||||||||||||| ||| ||| | ||||||| | | ||||  |||| |||||||||||||||||| ||    
T  44886014 gtagtctcattacacatgatgaaaccagggtgggatgcaaggcacggttatatttaaagaaaaataatgatatatggattgtttctagatttgtaagcga 44885915  T
Q  185 ccataatcatgaactattttccccaaacaattcacagtttcttagagtacatagaagcaaaaccaaagtgcnnnnnnnncttattgatgtgcttgatgat 284  Q
    |||||||||  | || ||||| || |  | | |||||| |||| | ||||||||||  ||||| |||||||        |||| |||||||||||||||     
T  44885914 ccataatcaccagctgttttctcctagaagtgcacagtctcttcgcgtacatagaaagaaaactaaagtgcaaaagacacttactgatgtgcttgatgaa 44885815  T
Q  285 tctggtataggc 296  Q
    |||||| |||||    
T  44885814 tctggtttaggc 44885803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 44886083 - 44886047
Alignment:
Q  17 aattggtcaagagattctttgttcaaaggaggggttt 53  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44886083 aattggtcaagaaattctttgttcaaaggaggggttt 44886047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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