View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_low_5 (Length: 328)
Name: NF8717_low_5
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 2567931 - 2568067
Alignment:
| Q |
1 |
agaggccagggttcttggacttggaccccatgccaccttgttgtccatgttcaactttgtgggtaaggattttccaacaaaagccattagaaatattttg |
100 |
Q |
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| T |
2567931 |
agaggccagggttcttggacttggaccccatgccaccttgttgtccatgttcaattttgtgggtaaggattttccaacaaaagccattagaaatattttg |
2568030 |
T |
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| Q |
101 |
aaatacatcgtctttatataagtcggttaaatcagac |
137 |
Q |
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| T |
2568031 |
aaatacatcgtctttatataagtcggttaaatcagac |
2568067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 2568086 - 2568183
Alignment:
| Q |
214 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtat |
311 |
Q |
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| T |
2568086 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtat |
2568183 |
T |
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