View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_low_8 (Length: 238)
Name: NF8717_low_8
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 2516782 - 2516909
Alignment:
| Q |
96 |
tcacagcaatggtatttagtatagtagcaagaccaaatataataaatttatgtgcactccaaattattaagccatgtggtatcacacatactaaacatgc |
195 |
Q |
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| T |
2516782 |
tcacagcaatggtatttagtatagtagcaagaccaaatataataaatttatgtgcactccaaattattaagccatgtggtatcacacatactaaacatgc |
2516881 |
T |
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| Q |
196 |
tcactccaacatttgcatgcaatggata |
223 |
Q |
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| T |
2516882 |
tcactccaacatttgcatgcaatggata |
2516909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 2509336 - 2509414
Alignment:
| Q |
142 |
tttatgtgcactccaaatta---ttaagccatgtggtatcacacatactaaacatgctcactccaacatttgcatgcaa |
217 |
Q |
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| T |
2509336 |
tttaggtgcactccaaattattattaagccatgtagtatcacacatactaaacatgctcacttcgaaatttacatgcaa |
2509414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 2512608 - 2512667
Alignment:
| Q |
158 |
attattaagccatgtggtatcacacatactaaacatgctcactccaacatttgcatgcaa |
217 |
Q |
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| T |
2512608 |
attattgagccatgtggtatcacacatactaaacatgctcacttccaaatttacatgcaa |
2512667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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