View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8717_low_9 (Length: 227)
Name: NF8717_low_9
Description: NF8717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8717_low_9 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 1488223 - 1488091
Alignment:
| Q |
97 |
gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaatttnnnnnnngtt |
194 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
1488223 |
gattcaaaccaataattcacgtgttgcaattaagaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaagtt |
1488124 |
T |
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| Q |
195 |
agaaaaaacaatctttatagcttcaaacaaagg |
227 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1488123 |
agaaaaaacaatctttatagcttcaaacaaagg |
1488091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1488319 - 1488253
Alignment:
| Q |
1 |
ccatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt |
67 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1488319 |
ccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt |
1488253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 50306261 - 50306127
Alignment:
| Q |
97 |
gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
50306261 |
gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag |
50306162 |
T |
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| Q |
193 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
50306161 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
50306127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50306357 - 50306291
Alignment:
| Q |
1 |
ccatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt |
67 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50306357 |
ccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt |
50306291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 26021649 - 26021515
Alignment:
| Q |
97 |
gattcaaaccaattcttcacgtgttgcaattaagaagcatgtttttt--atggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
26021649 |
gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag |
26021550 |
T |
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| Q |
193 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26021549 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
26021515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26021745 - 26021679
Alignment:
| Q |
1 |
ccatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt |
67 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26021745 |
ccatcaacactagcatctcatccatcatgaaactacaatccattttcatcttcaccatgttgttttt |
26021679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 3788745 - 3788879
Alignment:
| Q |
97 |
gattcaaaccaattcttcacgtgttgcaattaagaagcatg--ttttttatggaaccaattattaaaaacaatttcatgaattgtaattt--nnnnnnng |
192 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
3788745 |
gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaatttcatgagttgtaatttaaaaaaaaag |
3788844 |
T |
|
| Q |
193 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3788845 |
ttagaaaaaacaatctttatagcttcaaacaaagg |
3788879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3788649 - 3788715
Alignment:
| Q |
1 |
ccatcaacactagcatatcatccaccatgaaactacaatccattttcatcttcatcatgttgttttt |
67 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3788649 |
ccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt |
3788715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 37689751 - 37689707
Alignment:
| Q |
123 |
caattaagaagcatgttttttatggaaccaattattaaaaacaat |
167 |
Q |
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|||||||||| |||| ||||||||||||||||||| |||| |||| |
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| T |
37689751 |
caattaagaaacatgctttttatggaaccaattatcaaaatcaat |
37689707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 28124021 - 28123965
Alignment:
| Q |
107 |
aattcttcacgtgttgcaattaagaagcatgttttttatggaaccaattattaaaaa |
163 |
Q |
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|||||||||||||||||||||||||| || | |||||||||| ||||||| |||||| |
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| T |
28124021 |
aattcttcacgtgttgcaattaagaaacaagctttttatggacccaattaataaaaa |
28123965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 30003400 - 30003342
Alignment:
| Q |
110 |
tcttcacgtg-ttgcaattaagaagcatgttttttatggaaccaattattaaaaacaat |
167 |
Q |
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|||||||||| || |||||||||| |||| ||||||||||||||||||| |||| |||| |
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| T |
30003400 |
tcttcacgtgcttacaattaagaaacatgctttttatggaaccaattatcaaaatcaat |
30003342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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