View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8718_high_1 (Length: 553)

Name: NF8718_high_1
Description: NF8718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8718_high_1
NF8718_high_1
[»] chr5 (3 HSPs)
chr5 (7-553)||(9712255-9712785)
chr5 (15-82)||(9724346-9724413)
chr5 (174-238)||(16127056-16127120)
[»] chr7 (2 HSPs)
chr7 (251-301)||(36909607-36909657)
chr7 (185-238)||(6824305-6824358)
[»] chr8 (2 HSPs)
chr8 (59-127)||(31106371-31106440)
chr8 (251-291)||(6020663-6020703)
[»] scaffold0316 (1 HSPs)
scaffold0316 (252-295)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (188-238)||(4161642-4161692)
chr4 (201-238)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (251-320)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (276-317)||(37561553-37561594)
chr2 (174-238)||(17220847-17220911)
[»] chr3 (1 HSPs)
chr3 (396-428)||(2577163-2577195)


Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 7 - 553
Target Start/End: Original strand, 9712255 - 9712785
Alignment:
Q  7 agaagcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712255 agaagcagagaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctg 9712354  T
Q  107 ccaagcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttaaatgtgtgatgtgttgtc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9712355 ccaagcagatacatgttcataacctttgatgctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttacatgtgtgatgtgttgtc 9712454  T
Q  207 acaatagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  9712455 acaatagtctttgaatgtatcaaaatttcaaagtactcacggcgccatgattttgttgaagctctaaaatgtagcttttgccaaaaccatggtggcttgc 9712554  T
Q  307 cgtgattccgctaaacttaccgccaattcatttcagacatgcaccaacatacccaaatgcgactttcatcagccattttggtcatcaaattgtctttcat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9712555 cgtgattccgctaaacttaccgccaattcatttcagacatgcaccaacatacctaaatgcgactttcatcagccattttggtcatcaaattgtctttcat 9712654  T
Q  407 tagttagtttgattctcaaatgcgtcttatgccggtcaattcgtctatatacaattaccaataaaagacacacctgcttttgttatttcaatatattcaa 506  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||                ||||||||||||||||||||||||||||||||||||    
T  9712655 tagttagtttgattctcaaatgcatcttatgtcagtcaattcgtctat----------------aagacacacctgcttttgttatttcaatatattcaa 9712738  T
Q  507 acacaattctgacatcgcctcacacgtttagctaccaaatgattatt 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9712739 acacaattctgacatcgcctcacacgtttagctaccaaatgattatt 9712785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 9724346 - 9724413
Alignment:
Q  15 agaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatatta 82  Q
    |||||||||| |||||| ||| |  |||||| ||||||||||||||||||||||||||||||||||||    
T  9724346 agaggggtatggtgtaattcaactttaccacgtgcaaattttgatcaagcttcaaaactgaaatatta 9724413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 16127056 - 16127120
Alignment:
Q  174 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 238  Q
    ||||||||| || ||||||||| | | || ||||||||||||| | || ||||||||||||||||    
T  16127056 tcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaa 16127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 36909657 - 36909607
Alignment:
Q  251 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtgg 301  Q
    ||||||||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  36909657 ccatgattttgttaaagctctagagtgtagctcttgtcaaaatcatggtgg 36909607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 6824305 - 6824358
Alignment:
Q  185 cttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 238  Q
    ||||||||||||||||||| || | ||| |||||| ||||||||||||| ||||    
T  6824305 cttaaatgtgtgatgtgttttcgctataatctttgcatgtatcaaaattacaaa 6824358  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 31106440 - 31106371
Alignment:
Q  59 tcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaa-gcagatacatgttcata 127  Q
    ||||||||||||||||| ||||||||| |||||  ||||||||||||  |||  ||||||||||||||||    
T  31106440 tcaagcttcaaaactgatatattaccattagaatgtccaatatacctatcaacacagatacatgttcata 31106371  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 6020663 - 6020703
Alignment:
Q  251 ccatgattttgttgaagctctagaatgtagcttttgccaaa 291  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  6020663 ccatgattttgttgaagctctaaagtgtagtttttgccaaa 6020703  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 16023 - 16066
Alignment:
Q  252 catgattttgttgaagctctagaatgtagcttttgccaaaatca 295  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  16023 catgattttgttgaagttccaaaatgtagcttttgccaaaatca 16066  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 4161642 - 4161692
Alignment:
Q  188 aaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 238  Q
    |||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  4161642 aaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaa 4161692  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 971878 - 971915
Alignment:
Q  201 gttgtcacaatagtctttgaatgtatcaaaatttcaaa 238  Q
    ||||||||||||||| || |||||||||||||||||||    
T  971878 gttgtcacaatagtcattcaatgtatcaaaatttcaaa 971915  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 2783052 - 2782983
Alignment:
Q  251 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaa 320  Q
    |||||||||||||||||||| | | || ||||||   ||||||||| |||||| ||||||||||| ||||    
T  2783052 ccatgattttgttgaagctccaaagtgcagctttcaacaaaatcatagtggctcgccgtgattccactaa 2782983  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 37561594 - 37561553
Alignment:
Q  276 tgtagcttttgccaaaatcatggtggcttgccgtgattccgc 317  Q
    ||||||||||| ||||||||||||||||  ||||||||||||    
T  37561594 tgtagcttttggcaaaatcatggtggctcaccgtgattccgc 37561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 17220911 - 17220847
Alignment:
Q  174 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 238  Q
    ||||||||| |||||||||| ||| ||  |||||||||||||  | |||||||||||||| ||||    
T  17220911 tcattttggtccttaaatgtttgaagtcctgtcacaatagtcgctaaatgtatcaaaattacaaa 17220847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 2577163 - 2577195
Alignment:
Q  396 ttgtctttcattagttagtttgattctcaaatg 428  Q
    |||||||| ||||||||||||||||||||||||    
T  2577163 ttgtcttttattagttagtttgattctcaaatg 2577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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