View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8718_low_3 (Length: 448)
Name: NF8718_low_3
Description: NF8718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8718_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 283 - 410
Target Start/End: Complemental strand, 45804832 - 45804705
Alignment:
| Q |
283 |
ttagccaaaacccttcctagaaactccattaaatctttaatcgactgaatgtataggcacatgtaataagttaagaattactcaaaacgtgaccttatct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45804832 |
ttagccaaaacccttcctagaaactccattaaatctttaatcgactgaatgtataggcacatgtaataagttaagaattactcaaaacgttaccttatct |
45804733 |
T |
|
| Q |
383 |
atgaaaatattacccagctcggctatat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45804732 |
atgaaaatattacccagctcggctatat |
45804705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 45805083 - 45804875
Alignment:
| Q |
11 |
atggtgttcatagacaatgaaaggacatgtcttagtaagaaacgattcacttgatgatgaaggtttgagacctagaaatacactcaggtgcaaacaattt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45805083 |
atggtgttcatagacaatgaaaggacatgtcttagtatgaaacgattcacttggtgataaaagtttgagacctagaaatacactcaggtgcaaacaattt |
45804984 |
T |
|
| Q |
111 |
atgcttaggctagttcatacatgccttgctttgactttaattggtctctctgtcagtggattgtaggattggtccctcgaattagtggaatgcgagattg |
210 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45804983 |
atgctta--------------------gctttgactttaattgg--tctccgtaagtggattgtaggattggtccctcgaattagtggaatgcgagattg |
45804906 |
T |
|
| Q |
211 |
ataacctagattagtctattattctggatac |
241 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |
|
|
| T |
45804905 |
ataacctagattagtgtattattcttgatac |
45804875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University