View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8718_low_4 (Length: 304)
Name: NF8718_low_4
Description: NF8718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8718_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 47171558 - 47171831
Alignment:
| Q |
16 |
gacataaataattatataaaatagtattgagcttgttgctggtccnnnnnnnaattggggttctagctttggtttaaataggtgggagtcatttagtcct |
115 |
Q |
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| T |
47171558 |
gacataaataattatataaaatagtattgagcttgttgctggtcctttttttaactggggttctagctttggtttaaataggtgggagtcatttagtcct |
47171657 |
T |
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| Q |
116 |
ttgaattttagttgcaagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatcatataagtaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47171658 |
ttgaattttagttgcaagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatcatataagtaat |
47171757 |
T |
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| Q |
216 |
acaagatgatgatgattttaatatttttgatctcgtacttctgatttttattcacaatgcatttgatctatcttctct |
293 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
47171758 |
acaa---gatgatgattttaatatttttgatctcatacttctga-ttttattcataatgcatttgatctatcttctct |
47171831 |
T |
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