View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8718_low_6 (Length: 240)
Name: NF8718_low_6
Description: NF8718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8718_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47171389 - 47171167
Alignment:
| Q |
1 |
catagcctttgtactccataactgcagccacttcacgtgcaagagtgccacgaatgatagcttcaccttcaccagtgcaagaaactccacacacttcaca |
100 |
Q |
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| T |
47171389 |
catagcctttgtactccataactgcagccacttcacgtgcgagagtgccacgaatgatagcttcaccttcaccagtgcatgaaactccacacacttcaca |
47171290 |
T |
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| Q |
101 |
tgcataagttccagcaccaatgagaggtgaatcaccaattcgaccactcattttgttcattagccctccagttgaggttgcagcagcacatcttccttga |
200 |
Q |
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| T |
47171289 |
tgcataagttccagcaccaatgagaggtgaatcaccaattcgaccactcattttgttcattagccctccagttgaggttgcagcagcacatcttccttga |
47171190 |
T |
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| Q |
201 |
ctgtccaccaccacacaacctac |
223 |
Q |
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| T |
47171189 |
ctgtccaccaccacacatcctac |
47171167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 42162861 - 42163072
Alignment:
| Q |
6 |
cctttgtactccataactgcagccacttcacgtgcaagagtgccacgaatgatagcttcaccttcaccagtgcaagaaactccacacacttcacatgcat |
105 |
Q |
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| T |
42162861 |
cctttgtactccataactgctgccacctcacgcgcaagagtgccacgtatgattgcctccccttcaccagtgcaagaaactccacacacttcacatgcgt |
42162960 |
T |
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| Q |
106 |
aagttccagcaccaatgagaggtgaatcaccaattcgaccactcattttgttcattagccctccagttgaggttgcagcagcacatcttccttgactgtc |
205 |
Q |
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| T |
42162961 |
acgttccagcacctatgataggtgagtcaccaattcgaccactcattttgttcattagtcctccggtcgatgttgcagcagcacaccttccttcgctgtc |
42163060 |
T |
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| Q |
206 |
caccaccacaca |
217 |
Q |
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| T |
42163061 |
caccaccacaca |
42163072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 5479607 - 5479693
Alignment:
| Q |
125 |
aggtgaatcaccaattcgaccactcattttgttcattagccctccagttgaggttgcagcagcacatcttccttgactgtccaccac |
211 |
Q |
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|||||| |||||||| |||||| |||| |||||||||||||| || ||||| || ||||||||||||||||||| || ||||||||| |
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| T |
5479607 |
aggtgagtcaccaatccgaccaatcatcttgttcattagcccgcctgttgacgtggcagcagcacatcttccttcacggtccaccac |
5479693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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