View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8718_low_9 (Length: 218)
Name: NF8718_low_9
Description: NF8718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8718_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 17225569 - 17225770
Alignment:
| Q |
1 |
agaagttatgtgaagtaaaaaaggcattactatttaaactgggaactatttaaaattgaacaggtatgttacaacaaaaagtca--aaaattgtcatatt |
98 |
Q |
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| T |
17225569 |
agaagttatgtgaagtaaaaaaggcattactatttaaactgggaactatttaaaattgaacaggtatgttacaacaaaaagtcacaaaaattgtcatatt |
17225668 |
T |
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| Q |
99 |
gggctttcagaaaagcaatattcatatattgttccttatactactaattgtattgtaacactgccatgactccatgcagattatcttggtaactcatcct |
198 |
Q |
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| T |
17225669 |
aggctttcagaaaagcaatattcatatattgttccttatactactaattgtattgtaacactgccatgactccatgcagattatcttggtaactcatcct |
17225768 |
T |
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| Q |
199 |
ag |
200 |
Q |
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|| |
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| T |
17225769 |
ag |
17225770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 39948041 - 39947842
Alignment:
| Q |
24 |
gcattactatttaaactgggaactattt-aaaattgaacaggtatgttacaacaaaaagtcaaaaa--ttgtcatattgggctttcaga----------- |
109 |
Q |
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| T |
39948041 |
gcataactattaaaactgtgaactattttaaaatcgaacaggtatattacagcaaaaagtcacaaaagttgtcatattgtgctttcagataaacaatcaa |
39947942 |
T |
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| Q |
110 |
-aaagcaatattcatatattgttccttatactactaattgtattgtaacactgccatga--------ctccatgcagattatcttggtaactcatcctag |
200 |
Q |
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| T |
39947941 |
ggaagcaatattcatatattgttccctgtaatagtaactgtattgtaacactgccatgatttccatgcttaatgcagattatcttggtaactcatcctag |
39947842 |
T |
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