View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8719_high_3 (Length: 204)
Name: NF8719_high_3
Description: NF8719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8719_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 41702509 - 41702337
Alignment:
| Q |
15 |
tgttagggtttgtaaaatggaaatatggtggtgacacagtttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaa |
114 |
Q |
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| T |
41702509 |
tgttagggtttgtaaaatggaaatatggtggtgacacaggttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaa |
41702410 |
T |
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| Q |
115 |
gtgagtttatgtnnnnnnnnnnnnctgataatgggaattgctaaaaatcagaagaaactcagaaagtgatttt |
187 |
Q |
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| T |
41702409 |
gtgagtttaggtaaaaaagaaaaactgataatgggatttgctaaaaatcagaagaaactcagaaagtgatttt |
41702337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 41470183 - 41470282
Alignment:
| Q |
15 |
tgttagggtttgtaaaatggaaatatggtggtgacacagtttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaa |
114 |
Q |
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| T |
41470183 |
tgttagggtttgtggaattggaatctggtggtgacccgggttcagttttgggttgcatgttgatgatatgctgaaaaggtggaaactttagaagaaaaaa |
41470282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 41524785 - 41524852
Alignment:
| Q |
15 |
tgttagggtttgtaaaatggaaatatggtggtgacacagtttcagttttgggttccatgttcatgata |
82 |
Q |
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| T |
41524785 |
tgttagggtttgtggaatggaaacatggtggtgacccaggttcagttttgggttgaatgttcatgata |
41524852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 41499983 - 41500036
Alignment:
| Q |
60 |
ttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaa |
113 |
Q |
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| T |
41499983 |
ttttgggttgaatgttcatgatatggtcgaaagttggaaactttagtagaaaaa |
41500036 |
T |
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