View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8719_low_4 (Length: 228)
Name: NF8719_low_4
Description: NF8719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8719_low_4 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 6456469 - 6456259
Alignment:
| Q |
19 |
ccgtcttccccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatatgg-atgctattaagacatgggtccaagact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
6456469 |
ccgtcttccccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagact |
6456370 |
T |
|
| Q |
118 |
atgtctccttatactatccaacagatgaggcagtgcaaaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcatggtgacttgaa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6456369 |
atgtctccttatattatccaacagatgaagtagtgcaaaaggacactgaactacaaacttggtggaaggaagctgtagaaaagggtcatggtgacttgaa |
6456270 |
T |
|
| Q |
218 |
agacaagccat |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
6456269 |
agacaagccat |
6456259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 6449999 - 6449792
Alignment:
| Q |
22 |
tcttccccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatatgg-atgctattaagacatgggtccaagactatg |
120 |
Q |
| |
|
|||||||| || || ||||| |||| | |||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6449999 |
tcttcccctcacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtccaagactatg |
6449900 |
T |
|
| Q |
121 |
tctccttatactatccaacagatgaggcagtgcaaaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcatggtgacttgaaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6449899 |
tctccttatactatccaacagatgaggcggtgcaaaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcacggtgacttgaaaga |
6449800 |
T |
|
| Q |
221 |
caagccat |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
6449799 |
caagccat |
6449792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 6262516 - 6262441
Alignment:
| Q |
58 |
tacccttatgctgttgatggactagagatatgg-atgctattaagacatgggtccaagactatgtctccttatact |
132 |
Q |
| |
|
||||||||||||||||||||||| || || ||| ||||||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
6262516 |
tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatact |
6262441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6320639 - 6320552
Alignment:
| Q |
23 |
cttccccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatat-ggatgctattaagacatgggt |
109 |
Q |
| |
|
||||||| |||||| |||| ||| | |||| |||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
6320639 |
cttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatgggatgctatcaagtcatgggt |
6320552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6331101 - 6331014
Alignment:
| Q |
23 |
cttccccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatat-ggatgctattaagacatgggt |
109 |
Q |
| |
|
||||||| |||||| |||| ||| | |||| |||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
6331101 |
cttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatgggatgctatcaagtcatgggt |
6331014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 6390147 - 6390101
Alignment:
| Q |
64 |
tatgctgttgatggactagagatat-ggatgctattaagacatgggt |
109 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
6390147 |
tatgctgttgatggactagagatatgggctgctattaagtcatgggt |
6390101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 6273733 - 6273693
Alignment:
| Q |
50 |
tagaagactacccttatgctgttgatggactagagatatgg |
90 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6273733 |
tagaggactacccttatgctgctgatggattagagatatgg |
6273693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 7458263 - 7458203
Alignment:
| Q |
50 |
tagaagactacccttatgctgttgatggactagagatat-ggatgctattaagacatgggt |
109 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
7458263 |
tagaggactatccttatgcttctgatggactagagatatgggctgctattaagtcatgggt |
7458203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 9606026 - 9606224
Alignment:
| Q |
31 |
catggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatatgg-atgctattaagacatgggtccaagactatgtctccttat |
129 |
Q |
| |
|
||||| |||||||||| | | || |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
9606026 |
catggccttcgtcttgtgatcgaggactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagactatgtttccttgt |
9606125 |
T |
|
| Q |
130 |
actatccaacagatgaggcagtgcaaaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcatggtgacttgaaagacaagccat |
228 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9606126 |
attatccaaatgatgaggcagtacaaaaagacactgaattacaaacttggtggaaggaagttgtagaaaaaggtcatggtgacttgaaagacaagccat |
9606224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 9590505 - 9590575
Alignment:
| Q |
155 |
aaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcatggtgacttgaaagacaagc |
225 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
9590505 |
aaaagacactgaagtacaaacttggtgaaaggaagttgtagaaaagggtcatggtgacttaaaagacaagc |
9590575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 42689382 - 42689577
Alignment:
| Q |
34 |
ggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatatgga-tgctattaagacatgggtccaagactatgtctccttatact |
132 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||| |||||||| | || | |
|
|
| T |
42689382 |
ggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatggacaactattaaaacatgggtacaagattatgtctcagtgtatt |
42689481 |
T |
|
| Q |
133 |
atccaacagatgaggcagtgcaaaaagacactgaaattcaaaaatggtggaaggaagctgtagaaaagggtcatggtgacttgaaagacaagccat |
228 |
Q |
| |
|
|| ||||||| | | | |||| || |||| ||||| | |||||||| |||| |||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
42689482 |
atgcaacagacaatgatatcaaaaatgattctgagcttcaacattggtggaaagaagttgtagagaaaggtcatggtgatttgaaagacaagccat |
42689577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 42692442 - 42692366
Alignment:
| Q |
58 |
tacccttatgctgttgatggactagagatatgga-tgctattaagacatgggtccaagactatgtctccttatacta |
133 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
42692442 |
tacccttatgctcatgatggattagagatatgggctgcaataaagacatgggttcaagactatgtctccttgtacta |
42692366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 36745652 - 36745746
Alignment:
| Q |
28 |
ccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagagatat-ggatgctattaagacatgggtccaagactatgt |
121 |
Q |
| |
|
||||| |||||||| || | | || |||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
36745652 |
ccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt |
36745746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University